| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4217 |
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| Symbol | |
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| ID | 6118572 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5120967 |
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| End bp | 5123447 |
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| Gene Length | 2481 bp |
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| Protein Length | 826 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641635783 |
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| Product | ribonuclease R |
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| Protein accession | YP_001762568 |
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| Protein GI | 170728542 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.997198 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000734426 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCAAAG ATCCGCATTT AAAGCGTGAA CAAGAAAATT ACGAAAACCC AATTCCTAGC
CGCGAGTACA TTTTAGATTA CCTGCGCTCT GAAAAATCAC CCCTTAACCG TGAACGCATT
GCCGCAGCAC TTAAGCTTGA AAGTGAAGAA CACATTGAAG CCTTAAGACG TCGACTTCGT
GCAATGGAGC GTGACGGTGA GCTTGTCTTT ACCCGTGGCC AAGCATATGG CCTGCCAGAA
AGAATGGATC TGTTAACTGG AACCATCATA GGGCATAAAG ATGGCTTTGG CTTCCTCAAG
CTAGAAGAGG GGGGTGATGA CCTCTTTATT AATAACCGTG ACATGCTGAT GTATTTTCAT
GGCGATAAGG TATTGGCTCA GAAAGCCGGT GTTGATCGCA AAGGACGTCG CGAAGCCAGA
ATCGTGCGCT TGGTTCAGCA AAGAGCCGCT GCATTAGTGG GCCGCTTCCA TATGGATTCT
GGCATGGCAT TTGTTATTGC CGATGACAAA CGCATTACTC AAGAGATATT AATTCCTGAT
GAGGACCGCC TTGGTGCCCG TCAGGGAGAT ATTGTTGTAC TTGAACTGAC TCGTCGCCCT
GGACGCTATG TAAAAGCTGC GGGTAAGGTG ACAGAAGTGC TTGGACAACA GATGGCGCCA
GGTATGGAGA TTGAGATCGC GCTGCGTAAC TACGATCTAC CCCATAAATG GTCTGGTCTG
ATTGAGAAGA AGCTGCGTGC TATTCCCGAT GAAGTGACTG AAGATGATAA AAAAGGTCGC
GTCGATCTTC GTCAACTACC ATTAGTTACC ATAGATGGTG AAGACGCTCG AGATTTCGAT
GATGCGGTTT ACGCGGAGAA GAAAAAGAGT GGCGGCTGGC GTTTATGGGT GGCGATTGCC
GATGTGAGCC ATTACGTTCG CACCGAATCT GCACTGGATA GAGAAGCGCG TAGTCGTGGT
AACTCTGTCT ACTTCCCATC GCAAGTGATC CCAATGCTGC CGGAGAAGAT CTCTAATGGA
CTATGTTCAT TAATGCCAGA AGTTGATCGT CTCTGTATGG TGGCCGAGAT GACTATCTCT
GCAGCGGGTA AACTGTCAGG TTATAAGTTT TATCCAGCAG TGATGCACTC ACATGCACGC
CTTACTTACA CTCAAGTTGC CGATATGCTT GAGGGAGGAG AGGTCAGTGA CAAGCTTAAG
CCTATCTTCC CGCATCTGCA GACCTTGCAA TCTCTGTACT TAACCTTAGA TGAGACCCGT
GCTGAGCGTG GTGCTATCGC CTTTGAAACC ACTGAGACCA AGTTTGTCTT TAATGCAGAT
CGTAAGATAG ACAGCATAGT ACCGAGTAAC CGTAACCAAG CCCATAAGAT CATCGAAGAG
TGTATGATCT TGGCTAACGT TGCCTCGGTG AAGTTTGTTA AGAAGCACAA AGGCGAAGTA
CTTTACCGTG TACATGAATC GCCCTCTGAG CAGAAGTTAA CTAACTTCAA GGATTTCCTT
AAAGAGCGTG GTTTGACGAT GGAGGGAGGC TTAGAGCCAA CTCCTAAAGA CTATCAAGCG
ATTATGGAGC AAGTTGCTGA CAGGCCAGAT GCTGAGCTTA TTCAGATCAT GTTGCTTCGC
TCTATGAAGC AGGCGACCTA TACCCCAGAT AACGAGGGGC ACTTTGGTTT AGCACTTGAA
GCATACTCCC ACTTTACATC GCCTATTCGC CGTTACCCGG ATCTTATTTT ACACCGAGTG
ATCCGTTATC TGCTGGCGAA AGAGCGTGGA GAAGCCAAAG AGAAGTGGAC GCCAGATGGT
GGCTACAACT ATCAGATTGA GGAGTTAGAT CTGTTAGGCG AAGAGTGTTC AACCACTGAG
CGCCGCGCCG ATGAAGCGAC TCGTGATGTG AGCGACTGGC TTAAGTGTGA ATTTATGCGC
GATCATGTTG GTGATACGTT CGAGGCTGTC ATCGCTTCCG TGACTCACTT TGGCATGTTC
GTTCGTCTCG ATAAGCTGTT TATCGATGGC TTAGTGCATA TCTCAAGTCT AGGCAGCGAT
TACTATCAAT ATGATAATAT GCGTCAGCGC CTTGTGGGCG AGGCTTCAGG CCAAACCTAT
CAACTGGGCG ATTCTGTCAC GGTTAAGGTC GCAGGCGTTA ATCTTGATGA TCGTCAAATT
GATCTGATGA TGGCGGGCGA AGAGGGCAGA TCAAAACGCC CAAATCGTGG TAAGAAGCCG
ATGACTGCAC GAGAGCGTGT AAATGCCGAG GGAGCAAAAC TCGCCAAGGC GGATAAGAGT
GATAAGCCTA AACGTCGCGG TTCGCGCTCA AAGTCTGGTG CTGCTAAAGC CACGGGTGAA
AAGAGCTTTA AAACAGATAA AAGCGGTGGA GCCAAAAGCT CTGCAGGTAA AGCAAAGTCA
GCAGCTAAGA AGTCGAAGGC GAAAAAGTCT TCAACGAAAA AGAGTTCGGC TAAGCGCAAA
GCTAAAGTCA GTAAGTCGTA G
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| Protein sequence | MIKDPHLKRE QENYENPIPS REYILDYLRS EKSPLNRERI AAALKLESEE HIEALRRRLR
AMERDGELVF TRGQAYGLPE RMDLLTGTII GHKDGFGFLK LEEGGDDLFI NNRDMLMYFH
GDKVLAQKAG VDRKGRREAR IVRLVQQRAA ALVGRFHMDS GMAFVIADDK RITQEILIPD
EDRLGARQGD IVVLELTRRP GRYVKAAGKV TEVLGQQMAP GMEIEIALRN YDLPHKWSGL
IEKKLRAIPD EVTEDDKKGR VDLRQLPLVT IDGEDARDFD DAVYAEKKKS GGWRLWVAIA
DVSHYVRTES ALDREARSRG NSVYFPSQVI PMLPEKISNG LCSLMPEVDR LCMVAEMTIS
AAGKLSGYKF YPAVMHSHAR LTYTQVADML EGGEVSDKLK PIFPHLQTLQ SLYLTLDETR
AERGAIAFET TETKFVFNAD RKIDSIVPSN RNQAHKIIEE CMILANVASV KFVKKHKGEV
LYRVHESPSE QKLTNFKDFL KERGLTMEGG LEPTPKDYQA IMEQVADRPD AELIQIMLLR
SMKQATYTPD NEGHFGLALE AYSHFTSPIR RYPDLILHRV IRYLLAKERG EAKEKWTPDG
GYNYQIEELD LLGEECSTTE RRADEATRDV SDWLKCEFMR DHVGDTFEAV IASVTHFGMF
VRLDKLFIDG LVHISSLGSD YYQYDNMRQR LVGEASGQTY QLGDSVTVKV AGVNLDDRQI
DLMMAGEEGR SKRPNRGKKP MTARERVNAE GAKLAKADKS DKPKRRGSRS KSGAAKATGE
KSFKTDKSGG AKSSAGKAKS AAKKSKAKKS STKKSSAKRK AKVSKS
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