| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4203 |
|---|
| Symbol | |
|---|
| ID | 6118558 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 5106818 |
|---|
| End bp | 5107813 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641635769 |
|---|
| Product | tRNA-dihydrouridine synthase A |
|---|
| Protein accession | YP_001762554 |
|---|
| Protein GI | 170728528 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00742] tRNA dihydrouridine synthase A |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.40358 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000157643 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTCGC AAAACACAAA ATCATCAGTA AAACCTCTCA ATCGCACCTT CTCAATCGCG
CCCATGCTGG ATTGGACCGA TCGTCACTAT CGTTATCTAG CTCGTTTGAT GTCAGCAGAA
CTGCTTCTTT ACACTGAGAT GGTCACCACA GGGGCAATTA TTCATGGTAA GGGAGATTAC
CTCGCGTATA ACGAGGAGGA ACACCCTTTA GCCTTGCAAC TCGGCGGTTC TAATCCACAT
GATTTGGCGA TTTGTGCCAA ACAGGCAGTT GAGCGAGGCT ATGATGAGAT CAACTTAAAT
GTTGGTTGTC CTTCAGATCG TGTACAGAGT GGGCGTTTTG GTGCTTGCCT GATGGCAGAG
CCTTCATTAG TTGCTGAATG TGTGACGGCT ATGCGGGCAG TGGCTGATAT TCCGGTGACC
GTAAAGACGC GTATTGGTAT CGATGAACAA GATAGTTATG AGTTTTTAAC TGAGTTTGTA
GAAACAGTTA GAGATGCAGG TTGCGACACC TTTATTGTTC ATGCCAGAAA AGCTTGGTTG
CAGGGCTTAA GTCCAAAAGA GAACCGTGAG ATCCCACCAC TGGACTACGA TAGAGTATAT
CAACTTAAGC GTGATTACCC CGATTTAAGC ATCTCTATTA ATGGCGGTGT GAAGTCATTA
GAGGAGTGCA AGGTTCATTT GGTGAAATTA GATGGTGTGA TGGTTGGGCG TGAAGCGTAT
CAAAACCCCT ATATTTTGGC TAAGGTCGAT CAGCAGCTTT GTGGATTAGA TAAACCTGTA
TTAAGCCGAG ATGCTGTTTT AGAGAAATTT ATTCCCTATA TAGAGAAACA CCTGCAAGCC
GGTGGTCGTT TGAATCATAT TACTCGCCAT ATGACTGGAT TGTTTCAAGG GGAAGTGGGT
TCTAGGATCT GGAGGCGCTA TATAAGTGAA AATGCGCATA AGCCAGGTTC CGGTATAGAA
GTCATTGAAC AAGCAAGAAA AAATATGACT TCTTAA
|
|---|
| Protein sequence | MSSQNTKSSV KPLNRTFSIA PMLDWTDRHY RYLARLMSAE LLLYTEMVTT GAIIHGKGDY
LAYNEEEHPL ALQLGGSNPH DLAICAKQAV ERGYDEINLN VGCPSDRVQS GRFGACLMAE
PSLVAECVTA MRAVADIPVT VKTRIGIDEQ DSYEFLTEFV ETVRDAGCDT FIVHARKAWL
QGLSPKENRE IPPLDYDRVY QLKRDYPDLS ISINGGVKSL EECKVHLVKL DGVMVGREAY
QNPYILAKVD QQLCGLDKPV LSRDAVLEKF IPYIEKHLQA GGRLNHITRH MTGLFQGEVG
SRIWRRYISE NAHKPGSGIE VIEQARKNMT S
|
|---|
| |