Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4190 |
Symbol | |
ID | 6118545 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5095909 |
End bp | 5097804 |
Gene Length | 1896 bp |
Protein Length | 631 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641635756 |
Product | DNA topoisomerase IV subunit B |
Protein accession | YP_001762541 |
Protein GI | 170728515 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.218544 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGTGCCA TGACAAATCA ATATACCTCT GATGCAATTG AAGTCCTTAA TGGACTGGAT CCTGTAAAAC GCCGCCCTGG TATGTATACC GACACCACGC GTCCGAACCA TTTAGGACAA GAGGTTATTG ATAACAGTGT CGATGAAGCT CTGGCGGGGC ATGCAACTAA AATTGATGTT ATTTTGCATA AAGATAACTC TCTTGAAGTT ATCGATGATG GCCGTGGTAT GCCGATCGAT ATCCACCCTG AAGAGGGGAT CCCTGGTGTC GAACTTATCT TAACCAAACT TCATGCTGGC GGTAAGTTCT CTAACGACAA CTATCAGTTT TCAGGTGGTT TACACGGTGT AGGTATCTCA GTCGTTAACG CTTTATCTAA CCGAGTAGAG ATAACTGTAC GCCGAAATGG CCTTGTTTAT GATATGGCTT TTGAGCATGG TGATAAGGTT GAAGATCTAA CTGAGACTGG CACTTGTGGT CGACGTAATA CAGGTACTCG AGTGCATTTT TGGCCAACCC CTAGCTATTT CGACTCCGCT AATTTCTCCA TTCCCAAGCT GACCTACCTG TTAAGAGCAA AGGCTGTCTT ATGCCCTGGG CTTAAGATTA AGTTTGTCAA TAAACAGACC GATGAGACAA CAGAATGGCA CTATGAAAGT GGCCTGACCG ATTACCTTAT CTCCTCGGTA AAAGACTCCT TGATGCTACC TGAAGATCCT TTTGTGGGCT CGATGAAGGG AAATCAAGAG GCGGTTGATT GGGCTATTAC TTGGTTACCA GAGGGCGGGG ATTACCTTAA TGAAAGTTAT GTTAACCTGA TCCCTACGCC TCTAGGTGGC ACCCATGTTA ACGGTTTCAG GCAGGGCTTA TTGGACTCGA TGCGTGAGTT TTGTGAGTTT CGCAACCTTA TTCCCAGAGG AATAAAGTTA ACCCCAGAAG ATATCTGGGA TCGTAGTAGC TTTATCTTGT CGGTGAAGAT GCAAGATCCT CAATTTGCAG GTCAAACTAA AGAGAAGCTT TCAAGCCGTC AAAGTGCGGC ATTTGTATCG GGTATCGTAA GAGATGCCTT TAGTTTGTGG CTCAATACCC ATACAGACCA AGCAGCAGCC CTCGCTGAGA TGTGTATTAA CAACGCACAG AAGCGTTTAA AGTCTGCTAA AAAGGTTGCG CGAAAGAAGG TGACATCTGG TCCTGCACTA CCGGGTAAAT TAACTGATTG TAGTGGCCAA GACCCAATGC GTGGGGAGCT CTTCCTTGTG GAAGGAGACT CTGCTGGCGG AAGTGCAAAA CAGGCGCGAG ATCGTGAATT TCAGGCAATT ATGCCCCTTC GTGGTAAGAT CTTAAACACG TGGGAGGTGG ATGCAAGCCA AGTGTTAGCG TCGCAAGAGG TTCATGATAT CTCTGTGGCA ATAGGCTGCG ATCCAGATTG TGAAGATATT TCCGAGCTTA GATACGGTAA AATATGTATA TTAGCGGATG CTGATTCTGA TGGGCTGCAT ATTGCGACCT TGCTGTGCGC ACTGTTTATG AAGCATTATA AGGTGTTGGT TGAGCATGGC CATGTTTATG TTGCTATGCC GCCACTGTTC CGTGTTGATG TAGGTAAAGA GGTTTTTTAC GCGCTGGATG AGGCGGAAAA AGATGGCATT TTAGACCGGA TCACGGCTGA AAAGAAGAAA GGCAAAGTGC AGGTTACCCG ATTTAAAGGA CTAGGTGAGA TGAATCCTCT TCAGTTAAGA GAGACCACCA TGGATCCTAA TACCCGTAGA CTCGTTCAGT TAACGATTGA TGATGTAGAA GATACAATGG CAGTAATGGA TATGCTGCTT GCTAAGAAGC GTTCTGGAGA TAGAAAAACC TGGTTAGAAA CTAAGGGTGA TCTGGCAGAC TTTTAG
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Protein sequence | MCAMTNQYTS DAIEVLNGLD PVKRRPGMYT DTTRPNHLGQ EVIDNSVDEA LAGHATKIDV ILHKDNSLEV IDDGRGMPID IHPEEGIPGV ELILTKLHAG GKFSNDNYQF SGGLHGVGIS VVNALSNRVE ITVRRNGLVY DMAFEHGDKV EDLTETGTCG RRNTGTRVHF WPTPSYFDSA NFSIPKLTYL LRAKAVLCPG LKIKFVNKQT DETTEWHYES GLTDYLISSV KDSLMLPEDP FVGSMKGNQE AVDWAITWLP EGGDYLNESY VNLIPTPLGG THVNGFRQGL LDSMREFCEF RNLIPRGIKL TPEDIWDRSS FILSVKMQDP QFAGQTKEKL SSRQSAAFVS GIVRDAFSLW LNTHTDQAAA LAEMCINNAQ KRLKSAKKVA RKKVTSGPAL PGKLTDCSGQ DPMRGELFLV EGDSAGGSAK QARDREFQAI MPLRGKILNT WEVDASQVLA SQEVHDISVA IGCDPDCEDI SELRYGKICI LADADSDGLH IATLLCALFM KHYKVLVEHG HVYVAMPPLF RVDVGKEVFY ALDEAEKDGI LDRITAEKKK GKVQVTRFKG LGEMNPLQLR ETTMDPNTRR LVQLTIDDVE DTMAVMDMLL AKKRSGDRKT WLETKGDLAD F
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