| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4167 |
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| Symbol | |
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| ID | 6118518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5068929 |
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| End bp | 5069807 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 641635729 |
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| Product | HflC protein |
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| Protein accession | YP_001762518 |
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| Protein GI | 170728492 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
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| TIGRFAM ID | [TIGR01932] HflC protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000744211 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGAAGAT TAGTCGCAAT TATTGCAGCG GTGCTTGTCG CCGTACTCTT GTCCTCAATC
TTGGTTGTTA ATGAGGGCGA AAGAGCAATT GTTTCACGCT TTGGCAAGAT TTTAAAAGAT
GAAGGTGTGA CTCGTATCTA TGAGCCAGGT CTTCACCTTA AACTGCCTAT GATAGATAAG
ATTAGGTTTC TTGATTCGCG TATCCAGACA ATGGATGGCG CAGCTGACAG ATTTGTTACT
TCAGAGAAGA AAGACCTTAT GGTTGACTCT TATGTGAAGT GGAGAATTTC TGATTTCGAG
AAATACTACC TATCAACTGG TGGCGGTATT AAAGCCAATG CGGAGTCTCT ATTACAGCGT
AAGATTAACA ATGACCTTCG TACGGAGTTT GGTCGACGTA CGATTAAGGA GATTGTTTCT
GGTAGCCGTG ATGAACTTCA GCAAGATGCG TTAACTAATG CTGCAGAAAG TGCTGAAGAT
CTTGGTATCG AAGTGGTTGA TGTTAGGGTT AAACAGATCA ACTTACCTGC AAACGTCAGT
TCAAGTATCT ATCAGCGTAT GCGCGCAGAG CGTACCGCTG TTGCTAAAGA GCATAGAGCT
CAAGGTATGG AACAGTCTGA GATTATCCGT GCTAAAACAG ATGCTTCAGT AACTGTTCAA
ATCGCTGATG CAGAACGTAA AGCGTTAGAG ATCAGAGGTG AAGGTGATGC AACTTCAGCA
AAGATTTATT CTGATGCATA CTCTCAAGAT CCTGAGTTCT ATAGTTTTCT TCGTAGCTTA
GAAGCGTATA AAGAGAGTTT TTCAGACGGA TCTAATGTGA TGGTTTTAGA GCCTGATAGT
GAGTTTTTCA AGTATATGAA TAACTCTCAG TTGAAATAA
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| Protein sequence | MGRLVAIIAA VLVAVLLSSI LVVNEGERAI VSRFGKILKD EGVTRIYEPG LHLKLPMIDK
IRFLDSRIQT MDGAADRFVT SEKKDLMVDS YVKWRISDFE KYYLSTGGGI KANAESLLQR
KINNDLRTEF GRRTIKEIVS GSRDELQQDA LTNAAESAED LGIEVVDVRV KQINLPANVS
SSIYQRMRAE RTAVAKEHRA QGMEQSEIIR AKTDASVTVQ IADAERKALE IRGEGDATSA
KIYSDAYSQD PEFYSFLRSL EAYKESFSDG SNVMVLEPDS EFFKYMNNSQ LK
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