| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4119 |
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| Symbol | |
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| ID | 6118469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 5006768 |
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| End bp | 5008399 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641635680 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001762470 |
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| Protein GI | 170728444 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.158695 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGACGTT TTAGCCGCAA GCTCTATTTT AAAGTGGCAG CAGCTATTGC TGTAGGAGCT
GCAATTATCG CAGCTTTAAG CTCCTTCGCC TTTTATTTTG GTGAAGTGGC TAGAATTCAA
GAGCGAGCCA GAGCAGACAT TCATCAGCTA GTCAAAACGG TCGAGAAGAC AGCGACAATT
GCTGTTTATG TCCAAGATCA GGAGTTGGCT AAAGAGATTC TCACTGGTTT GGCGATGAAT
GATCTTGTTG CTGCTGTTGA GCTGGTGAGT GTTGCAGGTT TTTCTCTGGA CTCAGGTTCT
GGGTCACTCT TAAATTTAGA CCATGTTGAG CAGATTAAGC TATTTCACCC CTTTAACGAG
GCAGAGCAGA TAGGTGAGTT AAGGCTGTTA GCCGATGAGG TGTATATTAA CTATAACGCT
AAAGGCTCAG CGGTGAATCA AGCTCAGATG CTAGCTTTGT TAACGGTCAC AACAGCCCTG
CTTGTTTCTC TTATTGTACA TCAAACTTTA ACCTCCCCAC TTAATGAGAT CACCGATAAA
TTTGAAGAGG TAGAGCCAGG AAAAGATATA GAGATTAAGG TTCCTAGATT CCATCACGGT
GATGAGATTG GCAGTCTTGC TAAAGGGATA AACCGACTTA TCTCTTCATT GAATAGCTCA
ATTGAGTCAG AGCGAGATAT GAGGGAGAAA ACAGAGGTGT TGGAGAAGAA GTTTAGGCTG
ATCTTTGAAC AGGCAAGTGC GGGGATCTGT TTAATCGATG GCAACAACTT GCTCGTTACT
GCCAATCCAG CCTTTCAGAG TATTCTTTTA AAAACCCACT CAATTTCAGA TGCGATAGGC
TTAAAGCTAA CTGATTGGTT TCATAATCAA GAGCAGTTGG AGGCGTTTCT TTTAAAAATC
AGACATGACA ATAATTTGGA CACAGTTGCT CTGGATTTAA AGTTGAAAAC TCAGGCCGAT
AGTCGTGACT GTTGGGTACA CTGCTTATTT TCAAAAGTGA TGGACTGCGA TAAGGAGAGT
GGGCTGATCA TCGAAGTCTT AATGTATGAT GTGACAGAGC GAACGGAGAG AGAGGTGAGT
ACACGCTTTG AGGCCGATCA TGATGCACTA ACTCATTTGA AAAATAGACG TGCTGGTGAG
CGGTTATTGA GGTCTTTGTT CAATAGAGCA AGTGAGAACA GTGAGATGGC TGTGATTCTG
AATATCGATC TGGATAAGTT TAAAGCCGTT AATGATATCC ATGGCCATGA AGCGGGAGAT
TCGGTGCTAG TTGAGGTTGG TAAGCGGTTA ATGTCTGTAT TTAGAAATGA TGATATCTGC
ATTCGCTGGG GAGGCGATGA GTTTGTTGTT GGCTGCTATT TTGACACAAG CCGACTTGAG
GATAGGGGCG AAGCTGCAAT AGCGTCTTTG GGGGAAAAAC TGGTTATGAC AATGAGCCAA
AACTTCTCTT TATCTGATGA TGTGACAATA GAGATGGGAG CCAGTGTTGG TATCTCAGTC
TACCCTCAAC ATGGTCGTGA TTTAGAGCGT TTATTGACGG TAGCAGATCT AGCCATGTAT
CAGTCAAAAC AAGCAGGAAG GAACCAGTAC AGTATCTATC AGCCAGAGTT GTCGGCTCAA
AATTTAAGCT AA
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| Protein sequence | MRRFSRKLYF KVAAAIAVGA AIIAALSSFA FYFGEVARIQ ERARADIHQL VKTVEKTATI
AVYVQDQELA KEILTGLAMN DLVAAVELVS VAGFSLDSGS GSLLNLDHVE QIKLFHPFNE
AEQIGELRLL ADEVYINYNA KGSAVNQAQM LALLTVTTAL LVSLIVHQTL TSPLNEITDK
FEEVEPGKDI EIKVPRFHHG DEIGSLAKGI NRLISSLNSS IESERDMREK TEVLEKKFRL
IFEQASAGIC LIDGNNLLVT ANPAFQSILL KTHSISDAIG LKLTDWFHNQ EQLEAFLLKI
RHDNNLDTVA LDLKLKTQAD SRDCWVHCLF SKVMDCDKES GLIIEVLMYD VTERTEREVS
TRFEADHDAL THLKNRRAGE RLLRSLFNRA SENSEMAVIL NIDLDKFKAV NDIHGHEAGD
SVLVEVGKRL MSVFRNDDIC IRWGGDEFVV GCYFDTSRLE DRGEAAIASL GEKLVMTMSQ
NFSLSDDVTI EMGASVGISV YPQHGRDLER LLTVADLAMY QSKQAGRNQY SIYQPELSAQ
NLS
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