| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_4004 |
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| Symbol | |
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| ID | 6118354 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4873487 |
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| End bp | 4875532 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641635565 |
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| Product | TonB-dependent heme/hemoglobin receptor family protein |
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| Protein accession | YP_001762355 |
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| Protein GI | 170728329 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein
[TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.371484 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATGA TGACCAAGAA GCCTGTTGTG GTTGCACTAA CCATGGCTTT TAGCTCAACT
GCTTACGCCC AACAAGTTGA ACAAGTAACT GAATTTGATG AAGTACTAGT GACTGCTACT
CGAATAGCTG AAAAAGCATC ACAAAGTAGC CGCAGCGTTG CAGTTGTCGA TGAAGAGGAG
CTACAAGAGG CGCAGCCTGC ATCTGTGGCA GAAGCATTGC AAAATGAAGC CAATGTCACT
GTTAGTAATG GCCCCCGAGC CTCATCACAA GGGGTTGAGA TCCGAGGCTT GGGGGGGCAG
CGAGTTCTGC AGACTATAGA TGGTGCCAGA CAAAATACGG CCTCAGGGCA CAGAGGAACT
TATTTTATGG ATCCTGAGCT CCTAAGCTCG GTTGAGGTAG TTCGCGGTCC AGCCAGTAGC
TTGTGGGGGA GTGGTGCTAT TGGTGGTGTG GTAGCGCAAA ATACCAAGTC AGCTAAAGAG
ATGCTCGATG AAGGTGAGAG CTTTGGCGGT TACCTTAAAC AAGGTTATGA AACTAATGGC
GATAATGTAA AAACCAGCGG TGCAATTTAT GGTGTTGCAG ATCGCTTTGA TTGGTTGATT
AATGGGAGCT ATAACGACAG TAATAATATC AAGATAGGCA GAGATCAAAC CTTAGCAAAC
AGTGCTTCAC AAAGAAGCAG TGGCTTGATG AAGTTTGGTT GGGAGCCAAG TGATGAACAG
CGGTTGCAGT TCTCAGCTCG ATTCTCAGAT ACAGACGAGT TGGTGCCTAG TAATCCTGCG
GCTGAAGTGG GCAGCTCTGT CCCGCTTGTT AAGCGTAAAA CGAAAGATAA AAACTTCACC
TTAGAGCATA GCTTTAACCC CAGCAGTAAC CCTTACTTAG ATATCAAGAG TACGCTTTAC
TGGAACAGCA CAGATTATGA TGAAGACAGA GTCACTAAGG GCCAAATCGA TAGCACCGAA
TATGAGACCT TAGGTTTTAG TATTAATAAC AGCTCTATCT TTGGCGGCAC AACATTGACC
TATGGTGTCG ATGGTTATCA GGACAAGATA AAAACAGTCA GAGATGATGC TGGTCAGGTG
GGGCAGCGCC CAGGTGATAT TGATGGTGAA ACATCAGTTT GGGGGGCGTT TGCTAAGGCG
CAGGTGACAC TGACAGACTC ACTGTCGTTA GAGCCAGCAC TTAGATACGA CACTTTTGAA
AATGAAAGCA AAACGCTGTC AAAATCTTCA GATGACACAG CATGGTCTCC CTCTTTAGGT
CTTGTGTGGA ATACCAGTTC TTGGCTAACC CTTAGTGCAC GTTACGATGA GGCTTTTCGT
GCGCCGAGTT TTGAGGAGAT GTACTCCACA GGCACCCACT ACTGCATTCC GCCAATTCCA
GGCTTTCTGC CCGGCGGTTT ATGTAACACC TTCGAGATCA ATCCCGATCT AAAGGCTGAA
AAGGCGAAGA ATAAAGAGCT GAAAGCCGAT CTTCATTTCA CCGATTTAGC GGGTAATGAT
GAGCTAGGGA TCACCCTTAA CGTCTTTAGA AATGATGTTG ACGATTTTAT TGAGCAATCG
GTATCAAACC CGCTTATGGG TATTCCAGGG CTCGAGCAAA CAACCTCTTG GAATAATGTC
GACGAAGCTC GTCTTACTGG GTTTGAGTTT AAGACACGTT ACCGCTTTAA CCAGACTCGT
CTGACACTTA ACTATGGTCA GACAGAGGGT AAAGATAAGC GCTCTGATGA GTACTTAAGC
AATATTCCAG CTAAGAAGTT TGGCGTAGAT CTCTCACAGG GGATCATGGA GGGAGATATG
AAGCTTGGCA CACGTGTTAC CCATGTGGCC CAGCAAGATC AACTACCAAG CGAGAACAAG
CAAGATTACG ATTCATACAC TTTGTGGGAT GTTTACTTAG CATGGGAGCC TGCTATGGGA
ACATTTGAGG GTCTTCGTGT CGACTTTGCC ATTGAAAATA TCGGTGATGA GGAGTATCGC
CAAGCATGGC AGACTCTCTA CGAACAGGGG CGAAACATGA AGCTCTCTGC CCGTTACCGT
TTCTAG
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| Protein sequence | MKMMTKKPVV VALTMAFSST AYAQQVEQVT EFDEVLVTAT RIAEKASQSS RSVAVVDEEE
LQEAQPASVA EALQNEANVT VSNGPRASSQ GVEIRGLGGQ RVLQTIDGAR QNTASGHRGT
YFMDPELLSS VEVVRGPASS LWGSGAIGGV VAQNTKSAKE MLDEGESFGG YLKQGYETNG
DNVKTSGAIY GVADRFDWLI NGSYNDSNNI KIGRDQTLAN SASQRSSGLM KFGWEPSDEQ
RLQFSARFSD TDELVPSNPA AEVGSSVPLV KRKTKDKNFT LEHSFNPSSN PYLDIKSTLY
WNSTDYDEDR VTKGQIDSTE YETLGFSINN SSIFGGTTLT YGVDGYQDKI KTVRDDAGQV
GQRPGDIDGE TSVWGAFAKA QVTLTDSLSL EPALRYDTFE NESKTLSKSS DDTAWSPSLG
LVWNTSSWLT LSARYDEAFR APSFEEMYST GTHYCIPPIP GFLPGGLCNT FEINPDLKAE
KAKNKELKAD LHFTDLAGND ELGITLNVFR NDVDDFIEQS VSNPLMGIPG LEQTTSWNNV
DEARLTGFEF KTRYRFNQTR LTLNYGQTEG KDKRSDEYLS NIPAKKFGVD LSQGIMEGDM
KLGTRVTHVA QQDQLPSENK QDYDSYTLWD VYLAWEPAMG TFEGLRVDFA IENIGDEEYR
QAWQTLYEQG RNMKLSARYR F
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