| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3995 |
|---|
| Symbol | |
|---|
| ID | 6118345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 4864411 |
|---|
| End bp | 4866024 |
|---|
| Gene Length | 1614 bp |
|---|
| Protein Length | 537 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641635557 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001762347 |
|---|
| Protein GI | 170728321 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000737641 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.189989 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTACG ACTCAGATCA GCAACTTGAC CTCACCCAAT ACACCTCTCT TATCGATCTG
ATAGAGCAGA CAAGTGATAG GTACGGTGAC AAAACGGCTT ATGCTTGCCT TGGACACCAC
ACATCGTTTA GCGAAATAGA GCGAGACTCG CGTTACTTTG CCGCCTACCT CCAGAGCATT
GAAGGCTTAA ATGTCGGTGA TCGCATCGCC ATCCAGCTGC CCAATATTAC TCAGTTTGTT
ATTGCCGCCT ATGGTGCTAT ACGAGCAGGA ATGGTGATAG TAAACACTAA CCCACTCTAT
ACAGAGCGTG AACTCATTCA TCAATTTAAC GACTCTGGCG CCAAAGCATT AGTGGTACTG
TCAGATCTTC TGCCCACACT AACAAACGTG GTCGCCAAAA CCGATATAGA GACAGTGATC
TCAACCCATG CTCTTGATCT ACACGCACCA CAAGAGCAGG CTCAGCCTCA ACCAGAGGTT
CCCTTTGCGA CACTGACATT CCATCATATT TTGAGCCAAG GGGCTGAACT TAACTACCAG
CCAATTACCA GCCAACTTGA ACAACTTGCC GCCCTGCAGT ACACAGGTGG CACTACGGGA
CTCTCTAAAG GTGCCATGTT GAGCCACGGC AACCTTATCG CTAATGCCAT GCAGATAAAA
TCCCGTGTCG GCGACAAGCT TATCAAGGGT GAAGAGATTT TCGTTGCTCC GCTTCCCATC
TACCATATCT ACGCGTTTAT GGTGAACTTG GTGCTCTATT TTGAGCGAGG TGCCTGCTCG
GTACTAATCC CCAATCCCAG AGATATCTCA TCACTAATCC AAACCATCTC TAACTACAAA
TTCAGCGGTT TTGCAGGCTT AAACACACTC TTTGTTGGCC TCTGTCATCA GCCAGAGTTT
AAAGCCTTAG ACTTTTCTCA CCTCAAAGTG ACCATCTCAG GCGGCACCGC CCTGACCCAA
GCAGCGGCAA ATGTATGGCA ACAAACCACA GGCTGCACCA TCTCTGAAGG TTATGGACTC
TCTGAAACCT CACCCGTTGT ATCACTTAAC TCACCAGGGC TTGAACAGAT AGGCACCATA
GGCAAGCCAG TCATTGGCAC TGAGGTCAGG ATTCTCGATA CCGATGATAA CGAGGTTCCA
TTAGGTGAAA GTGGCGAAGT AGCAGTACGC GGTCCTCAAG TGATGCAAGG CTACTGGAAC
AAACCAGAGG AAACCGCCAA GGTGATGACC CAAGATGGGT TCTTTAAAAC TGGCGATATC
GGCGTAGCAA CCAGCGACGG CTTCCATAAA ATAGTCGACC GTATCAAAGA TATGATCATA
GTCTCAGGTT TTAACGTCTA CCCCAACGAG ATTGAAGATG TGCTCTCCAA CCACGACGCT
ATCTTAGAGT GTGCCGTTAT CGGCGTAAAA GATGAACGTG CAGGCGAAAA GGTCAAAGCG
GTTATCGTAT TAAATGATCA AAGTTCAGAC CAAGAAGCAG CCAGAGCAGA GCTTGAAAGC
TACTGCCGAG CACAGTTAAC TGCCTATAAA GTCCCTCGCA TTATCGAATT TGTTGATGCC
CTACCTAAAT CAACGGTCGG CAAGATCCTA AGACGAGAAC TAAGGGAAGG CTAA
|
|---|
| Protein sequence | MAYDSDQQLD LTQYTSLIDL IEQTSDRYGD KTAYACLGHH TSFSEIERDS RYFAAYLQSI
EGLNVGDRIA IQLPNITQFV IAAYGAIRAG MVIVNTNPLY TERELIHQFN DSGAKALVVL
SDLLPTLTNV VAKTDIETVI STHALDLHAP QEQAQPQPEV PFATLTFHHI LSQGAELNYQ
PITSQLEQLA ALQYTGGTTG LSKGAMLSHG NLIANAMQIK SRVGDKLIKG EEIFVAPLPI
YHIYAFMVNL VLYFERGACS VLIPNPRDIS SLIQTISNYK FSGFAGLNTL FVGLCHQPEF
KALDFSHLKV TISGGTALTQ AAANVWQQTT GCTISEGYGL SETSPVVSLN SPGLEQIGTI
GKPVIGTEVR ILDTDDNEVP LGESGEVAVR GPQVMQGYWN KPEETAKVMT QDGFFKTGDI
GVATSDGFHK IVDRIKDMII VSGFNVYPNE IEDVLSNHDA ILECAVIGVK DERAGEKVKA
VIVLNDQSSD QEAARAELES YCRAQLTAYK VPRIIEFVDA LPKSTVGKIL RRELREG
|
|---|
| |