| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3920 |
|---|
| Symbol | |
|---|
| ID | 6118269 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 4779776 |
|---|
| End bp | 4780474 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641635482 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_001762273 |
|---|
| Protein GI | 170728247 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.175599 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAGTA CCATGGACCC GATTAAAATT TTGGTGATTG AGGATGACAA GCTTCTCAAT
GCCCAATTAG CTGAACTACT GCGAGCCAAA GGCTATCTTG TTAATCAAAG TTTTGACGGT
GAGGATGGGT TACTGCAAGC ATCATCTAAG CTGTACCAGC TTATCCTACT CGATGTGATG
TTACCGGGCC GTGATGGTTT CTCACTGCTT AAAATGTTGC GTAAGTCTTG CCAAACTCCA
GTGATCATGG TGACAGCTAA AGGCGCCGAA GAGGAAAGAA TTCAAGGGTT TAGTCAAGGT
GCTGATGACT ACGTGGCAAA ACCTTTCAGT AGTACTGAGT TGCTATTACG TATCGAAGCA
TTATTGCGTC GTAGCCATAC TTTAAAGAAC GAATTGATAT CCCATGAGCT GATACTGGAT
AGTTTACAGA TCAACTACCG TGAGCAGACA GTCATGGTCT GTGAGCAGGT GCTAGAATTT
ACCCCGATCC AATTTAAGTT ACTGTGGGAG CTGCTGCTAC ACAGAGGTGA AGTGCTCAGT
AAAGCCTACC TTTACCAGAA GGTGTTGAAT CGAAATATTG GAGCTTATGA CAGAAGCTTA
GATATGCACT TGAGTCGAGT GAGACGTAAG CTTAATGATG CCGACTGGCA GGGAGAGCGA
CTGCAAACAT GCCACGGTAA AGGGTATTGC TTGGTATGA
|
|---|
| Protein sequence | MMSTMDPIKI LVIEDDKLLN AQLAELLRAK GYLVNQSFDG EDGLLQASSK LYQLILLDVM
LPGRDGFSLL KMLRKSCQTP VIMVTAKGAE EERIQGFSQG ADDYVAKPFS STELLLRIEA
LLRRSHTLKN ELISHELILD SLQINYREQT VMVCEQVLEF TPIQFKLLWE LLLHRGEVLS
KAYLYQKVLN RNIGAYDRSL DMHLSRVRRK LNDADWQGER LQTCHGKGYC LV
|
|---|
| |