| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3802 |
|---|
| Symbol | panB |
|---|
| ID | 6118151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 4641693 |
|---|
| End bp | 4642487 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641635365 |
|---|
| Product | 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| Protein accession | YP_001762156 |
|---|
| Protein GI | 170728130 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0413] Ketopantoate hydroxymethyltransferase |
|---|
| TIGRFAM ID | [TIGR00222] 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000451168 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00415006 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAAGA TAACTAGCTC TACCCTGCTA AAATTTAAGC AGGAAGGTAA AAAGTTCACC
GCACTCACCG CCTATGACGC CAGCTTTGCC AGCGCTTTCG ACAGTGAAGG AGTCGATGTA
CTGCTCGTCG GTGACTCTAT GGGAATGGTG CTTCAAGGAC ATGATGATAC TCTGCCTGTT
TCCGTAGAGG ATATCGCCTA CCACACCCGC TGTGTTCGCC GCGGTATCAA GCGCTCATTG
CTGATCTCTG ATATGCCATT TATGAGTTAC GCCACTCCAG AGCAAGCCAT GAGAAATGCC
ACAGCTCTTA TGCAAGCTGG TGCCAATATG GTTAAGGTAG AGGGAGGACA TTGGCTACTC
GAAACCGTGA CTATGTTAAC CGAGCGTGGT ATTCCAGTCT GTGCTCACTT GGGGCTCACC
CCTCAATCAG TTCACGTATT TGGTGGCTTT AAGGTCCAAG GTCGTGATGC TGATAATGCT
CAGCGCATTC TCGATGAAGC CAAAGCATTA GAAGCCGCAG GTGCTCAACT GCTGGTTGTC
GAGTGTATTC CAGCCGCTTT AGCTCAAACC ATTAGTGAAG CATTGACGAT TCCCGTTATC
GGCATAGGCG CGGGTGCAGG TACTGATGGT CAGATTTTAG TGATGCACGA TGTCCTTGGG
ATCTCCAGTG GCTATATTCC ACGCTTCTCA AAAAACTACC TTAAGCAAAC TGGCGAGATC
CGTGAAGCTA TCCGTGCTTA TATCGATGAA GTCGAGAAGG GAGTCTTCCC AGGTAGCGAC
CATACATTTA GCTAA
|
|---|
| Protein sequence | MSKITSSTLL KFKQEGKKFT ALTAYDASFA SAFDSEGVDV LLVGDSMGMV LQGHDDTLPV
SVEDIAYHTR CVRRGIKRSL LISDMPFMSY ATPEQAMRNA TALMQAGANM VKVEGGHWLL
ETVTMLTERG IPVCAHLGLT PQSVHVFGGF KVQGRDADNA QRILDEAKAL EAAGAQLLVV
ECIPAALAQT ISEALTIPVI GIGAGAGTDG QILVMHDVLG ISSGYIPRFS KNYLKQTGEI
REAIRAYIDE VEKGVFPGSD HTFS
|
|---|
| |