| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3780 |
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| Symbol | |
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| ID | 6118129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4609246 |
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| End bp | 4610460 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641635343 |
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| Product | putative aliphatic amidase expression-regulating protein |
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| Protein accession | YP_001762134 |
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| Protein GI | 170728108 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | [TIGR03407] urea ABC transporter, urea binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.583472 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00053565 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTTAAAAA AAATCCGCTT ATCTTTCTAT ATATGCTTAT TTATTATCGG GTTATTGGTT
GCATTACAGG CATGTAATAG GGAACAAAAC ACCAAAGTAA AAATTGGCGT CTTACACTCA
ATTACGGGCA CTATGTCTTT TAGTGAACGG GATCTTGTTG ATGTTATCTC ATTGGCAGTA
AAGGAGATTA ATCGAGATGG GGGCTTGTTG GGTAAAAAGA TTGAACCTGT TTTAGCCGAC
GGTGCCTCGG ATTGGAATAT ATTTGCAGCT AAGGCAGAGA AGTTAATCAC CACTGATAAG
GTCGCGGTCA TTTTTGGCTG CTGGACATCG AGTTGCCGCA AGTCGGTTAA GCCTGTGATT
GAGGAGCATC ATCACTTGAT GTTTTATCCT TTGCAATATG AGGGATTGGA GCTATCACCT
AATATCATCT ATACAGGAGC GACCCCTAAT CAGCAGATAA TTCCCAGTGT TCATTGGGCG
CTGGAGAACA TTGGTGAGCG TGTTTATCTG ATTGGTTCTG ATTATATCTT CCCTCGGGCT
GCGAATATGA TCATTAAAGA TCAACTAAAA AGTCGTGGTA TTACCCCTCT CGGTGAGACC
TATATTCCCT TAGGCTCGAA CGACCTTACA GAAGCGTTAA GGGAGATTGG GGAGCTTAAG
CCTGATGTTG TGGTGAATAC AATCAATGGT GACAGCAATA TCGCGTTCTT TAGAGGGATC
AGCACACTAA GTAAAGTTAA AGTGCTCTCC TATAGCATCG GAGAGCCAGA AGTGAGGGCG
ATAGGAGAGG AGTTAATGGT GGGGCATTTT GCCGCCTGGA ACTATTTTCA AAGCATTGAA
AGTGATGAAA ACAAACGCTT TATTGATGCT TTCAAGAGGG AGTTTGGAGC TGAAAGAGTG
GTAAACGACC CCATGGAGGC CACCTATATT GGGGTTAAGT TATGGGCCCA AGCTGTCAAG
TCTGCCGCTA GTTTCGAGCC GTTAAGAATA CGAAGCACTT TAGCTCATCA GAGTTTGAAT
GCTCCTCATG GGGTGGTATC GGTTGAGGCG CTATCTCAAC ATCTATGGAA AACGGTTCGA
ATAGGGCAAG TTCGTGATGA TGGTCAGTTT GATATTGTAT GGTCCAGTGA CTCTCCCATT
AGGCCGAGCC CTTTTCCTAC CTATCATAAG AAGCAGGAGT GGCTAAAAAG ACTTAGGGAG
TTAGAGCTGA AATGA
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| Protein sequence | MLKKIRLSFY ICLFIIGLLV ALQACNREQN TKVKIGVLHS ITGTMSFSER DLVDVISLAV
KEINRDGGLL GKKIEPVLAD GASDWNIFAA KAEKLITTDK VAVIFGCWTS SCRKSVKPVI
EEHHHLMFYP LQYEGLELSP NIIYTGATPN QQIIPSVHWA LENIGERVYL IGSDYIFPRA
ANMIIKDQLK SRGITPLGET YIPLGSNDLT EALREIGELK PDVVVNTING DSNIAFFRGI
STLSKVKVLS YSIGEPEVRA IGEELMVGHF AAWNYFQSIE SDENKRFIDA FKREFGAERV
VNDPMEATYI GVKLWAQAVK SAASFEPLRI RSTLAHQSLN APHGVVSVEA LSQHLWKTVR
IGQVRDDGQF DIVWSSDSPI RPSPFPTYHK KQEWLKRLRE LELK
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