| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3620 |
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| Symbol | |
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| ID | 6117954 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4415275 |
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| End bp | 4416639 |
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| Gene Length | 1365 bp |
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| Protein Length | 454 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641635173 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001761979 |
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| Protein GI | 170727953 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTATCT TACTCTTTTT GGTTGTTTGT TTGGTATTGA TGCTGGGCTA TCCAGTTGCA
TTAACGCTAG CGGGTGTTGC GTTGATGTTT GCAGGTATTG GTGAGTTAAC GGGGACTTTT
GATAGCAGTT TATTAGGCGC GCTGCCTAAC CGTTTATATG GCGTGATCAA TAATCCTATC
TTAATGGCTG TGCCGCTCTT TGTGTTTATG GGCGTGGTAT TAGAAAAGTC AAAAGTGGCA
GAGCAACTTC TGACCAGTAT GGCAGAGCTC TTTGGCCGCT TTAGAGGCGG GCTAATTTTC
AGTGTTTTCT TTGTGGGGAT GTTGCTTGCT GCTAGCACTG GGATCGTAGG GGCAACGGTG
GTTACCATGG GCTTGATGTC TTTGCCCTCC CTGTTGAAGA GAGGTTATGA CCCCGCATTT
AGCGCGGGAG CTATCTGCGC AACAGGCACC TTAGGGCAGA TTATTCCCCC TTCGATTGCG
CTTGTACTCT TGGGAGATGT GCTCTCAAAC GCCTATCAAC AGGCGCAACT TAAAATGGGG
ATATTTAGCC CGAAATCTGT TTCTGTTGGT GATCTGTTTG CTGGTGCGCT CATTCCGGGC
CTACTTTTGC TGGTGATGTA CTGTCTTTAT ACCTTGATAT TAATTAAACG TAAGCCTGAG
CAGTTTCCTG CAGTGCTCGA TAAACGCAGC ATAGATTTGA GCTTTGTGAT GCAAACTATC
AGCGCCTTAG TGCCACCATT ACTGCTTATT TTTCTGGTAT TGGGCTCAAT ATTACTCGGT
ATTGCTACGC CGACAGAAGC TGCATCTGTT GGCGCATTCG GTGCGCTAAT GATAGCGCTA
GTTAAGCGGC AGATGACTCT ACCCCTGTTA AAAGAGGTGA TGCTTAGCAC AACTAAGATC
ACCTCTATGG TGTTTCTTAT CTTGATTGGT GCCTCTATCT TCTCTCTTGT TTTTAGGGGA
TTTGGTGGTG AAGTGCTTAT CCATGACTTG TTCCACAATA TGCCTGGCGG CTTGATTGGC
GCTACGTTGC TGGTCATGTT AGTGATCTTT TTACTCGGAT TTATCCTGGA TTTTATTGAG
ATCACTTTCG TGGTTGTGCC TTTAGTTGCT CCTATATTAT TGGCGATGGG GCTCGATCCT
ATCTGGCTTG GGATCATGAT AGCGGTCAAT CTACAAACTT CATTTTTAAC CCCACCATTT
GGTTTTGCGC TCTTCTATTT AAGAGGGGTA AGTAAAGAGT TGGTGTCCAG CAGTCAGATC
TATAAAGGCG TGATCCCCTT TGTTGGGATC CAACTGCTTC TGATGTTGAT ATTGAGCATC
TGGCCCGAGT TAATCACTTG GCTCCCTTCT CAAATATATG GTTAG
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| Protein sequence | MAILLFLVVC LVLMLGYPVA LTLAGVALMF AGIGELTGTF DSSLLGALPN RLYGVINNPI
LMAVPLFVFM GVVLEKSKVA EQLLTSMAEL FGRFRGGLIF SVFFVGMLLA ASTGIVGATV
VTMGLMSLPS LLKRGYDPAF SAGAICATGT LGQIIPPSIA LVLLGDVLSN AYQQAQLKMG
IFSPKSVSVG DLFAGALIPG LLLLVMYCLY TLILIKRKPE QFPAVLDKRS IDLSFVMQTI
SALVPPLLLI FLVLGSILLG IATPTEAASV GAFGALMIAL VKRQMTLPLL KEVMLSTTKI
TSMVFLILIG ASIFSLVFRG FGGEVLIHDL FHNMPGGLIG ATLLVMLVIF LLGFILDFIE
ITFVVVPLVA PILLAMGLDP IWLGIMIAVN LQTSFLTPPF GFALFYLRGV SKELVSSSQI
YKGVIPFVGI QLLLMLILSI WPELITWLPS QIYG
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