| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3556 |
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| Symbol | |
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| ID | 6117888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4340291 |
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| End bp | 4342399 |
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| Gene Length | 2109 bp |
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| Protein Length | 702 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641635107 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_001761915 |
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| Protein GI | 170727889 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000150136 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGAATCCAA TCGTAAAAAG TTTTGAATAT GGTCAACATA CAGTCACCTT GGAAACTGGG
GTTATAGCCC GCCAAGCAAA TGCTGCGGTT TTAGCAAGTA TGGGTGATAC AACAGTATTA
GTCACTGTCG TTGGAAAGAA AGCAGAAGAC GTGGGCCGTG ACTTTTTTCC TTTAACCGTT
AACTATCAGG AAAAAACATA CGCAGCGGGT AAGATCCCTG GCGGTTTCTT CAAGCGTGAA
GGTCGTCCTT CAGAAAATGA AACCCTGATT GCACGTCTAA TTGACCGTCC AATCCGTCCT
CTTTTCCCTA ACGGTTTCAA AAACGAAGTT CAGGTTATCA TCACAGTGGT TTCAGTTGAT
CCAGAGATCA ACCCAGATGT TATCTCTATG ATTGGTACTT CTGCTGCACT TAGTATCTCA
GACCTGCCGT TCAATGGTCC TCTAGGTGTT GCTCGTGTTG GTTATACCAA TGGCGAATAT
GTACTTAACC CAAATGTTAG CCAGTTAGCT GAAAGCGATT TAGACCTAGT TGTTGCCGGT
ACTCAAGGCG CAGTATTGAT GGTTGAATCT GAAGCGGCTT CACTTCCTGA AGAGGTGATG
TTAGGTGGTG TGGTTTATGG TCATGACCAG CAGCAAGTAG TTATCAATGC GATTAATGAG
CTAACTGCTG AAGCGGGTAA AACTAAGTGG GATTGGACAG CACCAGCTGA AGATACTGAC
TTAGTTGAGA AGATTAAAGG TCTGGCTGAA GCTGAACTGA CAAATGCATA CCAGATTGCT
GATAAGCATG AGCGTCGTGA TGCGGTTATC GCACTTAAAA ATGCAGCCGT TGCCAAGCTT
GTTGAAGAGA ACGCAGATGT TGATCTACGT GAAGTTGACA AGTTACTTGG TAGCCTAGAG
AAGAAAGTGG TTCGTAGCCG CATCATCTCT GGTAGCCCAC GTATCGATGG TCGTGAGCCT
GATATGGTTC GTGCACTTAA CGTTATGGCG GGTGTACTTC CACGTACTCA CGGTAGCTCT
TTGTTCACTC GTGGTGAAAC TCAAGCACTC GTTACTTGTA CTTTAGGTAC TGAGCGTGAC
GCTCAGAAAG TTGATAGCAT CATGGGCGAG TACACAAACC GCTTTATGCT TCACTATAAC
TTCCCTCCTT ACTCTGTTGG TGAAACAGGT ATGGTTGGTT CACCTAAGCG TCGTGAAATT
GGTCACGGTA AGCTAGCATG GCGTGGTATT AACGCTGTTA TGCCTACAGC TGAAGAGTTC
CCATACAGCG TTCGTGTTGT ATCTGAGATC ACTGAATCTA ACGGTTCAAG CTCTATGGCT
TCAGTTTGTG GTACTTCATT AGCACTTATG GATGCGGGTG TTCCAATCAA GACTTCTGTA
GCAGGTATCG CTATGGGTCT AGTTAAAGAG GGCGACGACT TTGTTGTTCT TTCTGACATC
CTAGGTGATG AAGATCATCT TGGTGATATG GACTTTAAAG TAGCTGGTAC GCGTGATGGT
ATTACTGCAC TGCAGATGGA TATCAAGATT GAAGGTATCA CTAAAGAGAT CATGCAGATT
GCTCTACAGC AAGCTTACGG CGCACGTGTT CATATCCTAA ACGTGATGGA TCAAGCTATC
TCTGGTCACC GTGAAGATAT CTCTGATCAC GCTCCACGTA TCACGACTCT TAAGATTAAT
CCTGAGAAGA TCCGTGATGT TATTGGTAAA GGTGGTGCGA CTATTCGTGC GCTTACCGAA
GAGACTGGTA CTACGATTGA GCTAGAAGAT GACGGTACTG TTAAGATCGC ATCTGCTAAC
GGTGAAGCAA CGAAAGAAGC TATCCGTCGT ATCGAAGAGA TCACTGCTGA AGTTGAAGTT
GGTACGGTAT ACAACGGTAA AGTTGTTCGT ATCGTTGATT TCGGTGCGTT TGTGACTATT
CTTCCAGGTA AAGATGGTCT AGTACACATC TCTCAAATCG CAGAAGAGCG TGTTGCTAAC
GTTTCTGATT ACCTACAAGT AGGCCAAGAA GTTAAAGTTA AGGTGATGGA AGTTGATCGC
CAAGGTCGTG TACGTCTTTC AATGAAAGAA GCACAACCTA AAGCTGAAGC GGCTCCAGCT
GCTGAATAA
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| Protein sequence | MNPIVKSFEY GQHTVTLETG VIARQANAAV LASMGDTTVL VTVVGKKAED VGRDFFPLTV
NYQEKTYAAG KIPGGFFKRE GRPSENETLI ARLIDRPIRP LFPNGFKNEV QVIITVVSVD
PEINPDVISM IGTSAALSIS DLPFNGPLGV ARVGYTNGEY VLNPNVSQLA ESDLDLVVAG
TQGAVLMVES EAASLPEEVM LGGVVYGHDQ QQVVINAINE LTAEAGKTKW DWTAPAEDTD
LVEKIKGLAE AELTNAYQIA DKHERRDAVI ALKNAAVAKL VEENADVDLR EVDKLLGSLE
KKVVRSRIIS GSPRIDGREP DMVRALNVMA GVLPRTHGSS LFTRGETQAL VTCTLGTERD
AQKVDSIMGE YTNRFMLHYN FPPYSVGETG MVGSPKRREI GHGKLAWRGI NAVMPTAEEF
PYSVRVVSEI TESNGSSSMA SVCGTSLALM DAGVPIKTSV AGIAMGLVKE GDDFVVLSDI
LGDEDHLGDM DFKVAGTRDG ITALQMDIKI EGITKEIMQI ALQQAYGARV HILNVMDQAI
SGHREDISDH APRITTLKIN PEKIRDVIGK GGATIRALTE ETGTTIELED DGTVKIASAN
GEATKEAIRR IEEITAEVEV GTVYNGKVVR IVDFGAFVTI LPGKDGLVHI SQIAEERVAN
VSDYLQVGQE VKVKVMEVDR QGRVRLSMKE AQPKAEAAPA AE
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