| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3552 |
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| Symbol | |
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| ID | 6117884 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4336138 |
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| End bp | 4336929 |
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| Gene Length | 792 bp |
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| Protein Length | 263 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641635103 |
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| Product | TatD-related deoxyribonuclease |
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| Protein accession | YP_001761911 |
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| Protein GI | 170727885 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0084] Mg-dependent DNase |
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| TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0158223 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000675028 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | GTGTCTAAAT CAGTACATTG TCCAAAAATT ATCGACAGTC ATGCGCACAT AGACTTTCCT
GAGTTTGATG ATGATCGCGC TGAGCTTTTT AAGGCGATGA GAGCCATGGG GATCAATACC
GCCTTGATAC CGGGCGTCTC TCCCTCCCAT TGGGAAAATC AGCTCCATAT TGCTGCTCAA
TACTCCTGTC CTTATGCCCT AGGGATACAC CCTTGGTTTT TCAGTGATAA CTACAGCGCT
GAGCTCTCAG AGCTTGATAA AGCCGTCAAT CAACGAAGCC AAGAGCCCAA GTTTGTTGCA
ATAGGCGAGT GTGGTTTAGA TAAGCTGCGT GGTGGAGACT GGGAGATACA GTTAAAGGTG
CTCGAGCATC AATTAACACT GGCGAAGTCG CTCAACCTGC CGGTAATTTT ACATGTTGTT
AAGGCTCACA GTGAACTCAT TGCTCTTTTG AAAGCAGTTA AATTGGCCAG AGGTGGGGTG
ATACATGGCT TTTATGGCTC GTTAGAGGTT GCACAGGAGT ATGTTAAATT AGGTTATAAA
CTCGGAATCG GTGGTTTAAT TTTAAACAAA GATGCGAAAA AACTTAAAGC TTGCGTGACA
AATATTTCTC TGAATTCGCT CATAATTGAA ACAGATTCCC CTGCTATGGG CCCTAAACAC
CTAGCTGAAA AACGTAATAC ACCTCTTATT TTGCCCTCAA TCATCGAAGA AATTGCGAAA
TTACAAAAAA AATCGAGTGT TCTTGTTTCA GAACGAATGT TTGAGAATGT AACGCAACTC
TTTGACCTTT AA
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| Protein sequence | MSKSVHCPKI IDSHAHIDFP EFDDDRAELF KAMRAMGINT ALIPGVSPSH WENQLHIAAQ
YSCPYALGIH PWFFSDNYSA ELSELDKAVN QRSQEPKFVA IGECGLDKLR GGDWEIQLKV
LEHQLTLAKS LNLPVILHVV KAHSELIALL KAVKLARGGV IHGFYGSLEV AQEYVKLGYK
LGIGGLILNK DAKKLKACVT NISLNSLIIE TDSPAMGPKH LAEKRNTPLI LPSIIEEIAK
LQKKSSVLVS ERMFENVTQL FDL
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