| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3411 |
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| Symbol | |
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| ID | 6117743 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4172105 |
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| End bp | 4172824 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641634966 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001761774 |
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| Protein GI | 170727748 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCTCG ATAAATTTCT ATGTAAGAGC ACACAACTGA CGCGCCATGA GGCCTGTGAA
CTGATATTGG CAGGCAAGGT CTTGGTCAAT GGTGAGTCTG TTGTTAGCCC TTCTGCTCAG
GTCCATGAAA ATAATCATAT TCGCTTAGAG GGTGGCCAGC GGCTTACTGC CCGAGCATCT
CGCTATATCA TGTTGCATAA ACCTGCCGAC ACCTTAAGTT CGAATGTTGA TGGCGATCAT
CCCAGTGTGT TTAATTTTAT CAATTTAGAG CATACCAGTG AGTTGCATAT TGCAGGCCGG
TTAGACGCTG ATACCACAGG ATTACTACTG ATAACCGATG ATGGTCGTTG GTCATTTAAC
GTGTTTAATC CCAAATACCA TTGCGAAAAG GTGTATCGCG TTTATTTGCG AGACTCTATT
GAGGGAGAGA TAGCCGGAGA GATAGATGCT GAGCTTAAAG CTCGTTTTAA GCAGGGGTTA
GACCTACAGG GAGAGCAAGC GCTAACTCTG CCAGCAAAGC TTGAGTTTGT TTCCCCTAAA
GAGGTGCTGC TGACTATCAC TGAGGGGCGA TACCACCAGA TGAAGCGTAT GTTTGCGCGT
GTCGGTAACC GAGTTAACGC TTTGCATCGA GAGCAGGTGG GAAAGATAAA ACTTGATATG
CCTGTTGGTC AGTGGCGCTA CTTAACTCGT GAAGAGATAG ACTCGATTCC TCAATACTAA
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| Protein sequence | MRLDKFLCKS TQLTRHEACE LILAGKVLVN GESVVSPSAQ VHENNHIRLE GGQRLTARAS
RYIMLHKPAD TLSSNVDGDH PSVFNFINLE HTSELHIAGR LDADTTGLLL ITDDGRWSFN
VFNPKYHCEK VYRVYLRDSI EGEIAGEIDA ELKARFKQGL DLQGEQALTL PAKLEFVSPK
EVLLTITEGR YHQMKRMFAR VGNRVNALHR EQVGKIKLDM PVGQWRYLTR EEIDSIPQY
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