| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3339 |
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| Symbol | alaS |
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| ID | 6117671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4090572 |
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| End bp | 4093196 |
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| Gene Length | 2625 bp |
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| Protein Length | 874 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641634895 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_001761703 |
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| Protein GI | 170727677 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0101035 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000688194 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTATCAAA CCACTGCAGC GCTAAGAAGT GCTTTCTTGG AGTATTTCCG CACTAACGGT
CATCAGGTTG TGGACAGTAG TTCACTGGTA CCTGTAAATG ATCCAACCTT GCTGTTTACT
AACGCAGGTA TGAACCAGTT TAAAGATGTA TTTCTAGGAG AAGATAAGCG TAGTTATACA
CGAGCTACCT CTTCTCAGCG TTGCGTGCGT GCCGGTGGTA AGCACAATGA TCTGGATAAT
GTGGGTTATA CCGCTCGTCA CCATACCTTT TTCGAAATGT TAGGTAATTT TAGCTTCGGT
GATTACTTTA AGCGTGAAGC AATCAGCTTT GCATGGAACT TTCTGACTCA AGAGCTAAAG
CTTCCTAAAG AACGTCTATG TGTCACCATC TATGAAACCG ATGATGAAGC TTTTGATATC
TGGACTAAAG AGATTGGAGT TCCAGCAGAG AGTTTGATCC GTATCGGCGA TAATAAAGGG
GCTCCATATG CCTCTGATAA CTTCTGGCAG ATGGGTGATA CAGGTCCTTG TGGTCCTTGT
TCTGAGATCT TCTATGATCA TGGCGATCAT ATCTGGGGTG GTCGTCCAGG TACGCCTGAA
GAGGATGGTG ATCGTTTTAT CGAGATCTGG AATATCGTAT TTATGCAGTA CAACCGCCAA
GCTAGTGGCG AGATGTTACC GCTGCCAAAG CCCTCTGTTG ATACTGGTAT GGGGATTGAA
CGTATTGCTG CGATTATGCA GGGTGTTCAC TCTAACTATG AAATAGATAT TTTCCAGGCG
TTGATCAAGA AAACGGCTGA GATCTTAGGG GTTACAGATT TAGAGAATAA ATCCTTGCGG
GTTATCTCTG ATCATATTCG CTCATGTGCG TTTTTAATTG CAGATGGTGT TATGCCATCA
AATGAAGGTC GAGGCTATGT GCTTCGCCGT ATTATTCGCC GCGCAGTTCG TCATGGTAAT
AAGTTAGGTG CAACAAGCTC CTTCTTCTAT AAGTTGGTAC CAACACTGAT TGAGGTGATG
GGGGATGCTG CTAAGGGACT GGTTGAGACA CAAGCTATTG TTGAGAAATC ATTGAAAGCG
GAAGAGGAGC AGTTTGCTCG TACGCTTGAG CGTGGTTTAG GCATTCTTGA TGGTGCGCTT
AATGAGCTTA AGGGCGATGT ACTTGACGGT GAGACTGCAT TTAAACTTTA TGATACATAT
GGTTTCCCTG TTGATTTAAC CGCTGATGTT TGTCGTGAGC GTGAGATCAC TGTTGATGAG
GCTGGTTTTG AAGTTGCTAT GGCCGAGCAA AGAAGCCGTG CTCAAGCTGC TGGCCAGTTC
GACACAGATT ACAATGATTC TCTTAAAATT GATGAAGAGA CTCATTTTTC TGGTTATACC
GAACTCACTG CACAGGGCAA GGTTACCGCT ATTTATAAAG CTGGCGAGTC AACAGATAGC
TTAAATGCTG GTGAAGATGC GGTTATCGTT CTCGATAGCA CGCCATTTTA TGGTGAGTCA
GGCGGACAGT GTGGTGATAA AGGTCTACTG ACAGCTAAAG GCGTCGAGTT TGACGTTAAA
GATACACAAA AATATGGTCA AGCCGTTGGA CATCAGGGAA CGGTTAATTC AGGTAGCATC
AGCGTGGGTG ATACACTCGA GGCGATTGTT GATAAGAAGC TTCGTCATCG TACTGAGTTA
AATCACTCTG TTACTCACTT GCTGCATGCA GCATTGCGCC AACTTTTAGG TACGCATGTC
ACTCAGAAAG GCTCTTTGGT TGATGCAGAA AGGTTACGCT TTGACTTTTC TCATTTTGAA
GGTGTAAAAC CTGAAGAGTT GAAAGCGGTT GAAGATCTTG TCAATACTCA GATCCGTCGT
AACCATAAAC TATCCGCTGA TGTGATGGAT ATGGATCAGG CCAAAGAGCG CGGTGCAATG
GCACTGTTTG GTGAGAAGTA CACAGATGAG GTTCGCGTGG TCACTATGGG TGATTTCTCA
ATCGAGCTTT GTGGTGGTAC TCATGTTGGC CGCACTGGTG ACATTGGTTT GTTTAAGATC
ACCTCTGAAG GTGGTATTGC TGCAGGTGTT CGTCGTATTG AGGCGGTCAC TGGAGCGGCT
GCTATGGCAT ATGTGGCTGC TCAGAAAGCT GAGTTAGATC AAGCGGCAGC CTTGCTCAAA
GCAGATAGTA ACTCAGTTGT GACTAAGCTA AAGGCTCAAT TAGATCGCAC TAAGTTACTT
GAAAAGGAGT TGTCTCAACT CAAAGATAAA CTTGCGGCAG CCACTAGCGC TGATTTAGCC
GGTGAAGCTA AGCAGGTTAA TGGGGCTAAG GTTCTGATTA AGAAGCTTGA AGGAGTTGAT
GCTGGCGCTC TTCGAGGGTT GCAAGATGAA CTTAAGCAGA AGTTAGGCTC AGGTGTAGTT
GTACTTGCTA TTGCTGGTGA AGCGAAAGTT AACCTTATTG TTGGTGTGAC CAAAGATCTT
ACCGCTAAAG TAAAAGCGGG TGAGCTTGTT GCTTCAATTG CTGCTCAAGT GGGTGGTAAA
GGTGGCGGAC GTCCAGATAT GGCTCAAGCT GGTGGAACAG AGCCAGAAAA GCTAGATGGA
GCCTTAGAAC AAGTTTTACC TTGGCTTGAG GAACGTTTAG CTTAG
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| Protein sequence | MYQTTAALRS AFLEYFRTNG HQVVDSSSLV PVNDPTLLFT NAGMNQFKDV FLGEDKRSYT
RATSSQRCVR AGGKHNDLDN VGYTARHHTF FEMLGNFSFG DYFKREAISF AWNFLTQELK
LPKERLCVTI YETDDEAFDI WTKEIGVPAE SLIRIGDNKG APYASDNFWQ MGDTGPCGPC
SEIFYDHGDH IWGGRPGTPE EDGDRFIEIW NIVFMQYNRQ ASGEMLPLPK PSVDTGMGIE
RIAAIMQGVH SNYEIDIFQA LIKKTAEILG VTDLENKSLR VISDHIRSCA FLIADGVMPS
NEGRGYVLRR IIRRAVRHGN KLGATSSFFY KLVPTLIEVM GDAAKGLVET QAIVEKSLKA
EEEQFARTLE RGLGILDGAL NELKGDVLDG ETAFKLYDTY GFPVDLTADV CREREITVDE
AGFEVAMAEQ RSRAQAAGQF DTDYNDSLKI DEETHFSGYT ELTAQGKVTA IYKAGESTDS
LNAGEDAVIV LDSTPFYGES GGQCGDKGLL TAKGVEFDVK DTQKYGQAVG HQGTVNSGSI
SVGDTLEAIV DKKLRHRTEL NHSVTHLLHA ALRQLLGTHV TQKGSLVDAE RLRFDFSHFE
GVKPEELKAV EDLVNTQIRR NHKLSADVMD MDQAKERGAM ALFGEKYTDE VRVVTMGDFS
IELCGGTHVG RTGDIGLFKI TSEGGIAAGV RRIEAVTGAA AMAYVAAQKA ELDQAAALLK
ADSNSVVTKL KAQLDRTKLL EKELSQLKDK LAAATSADLA GEAKQVNGAK VLIKKLEGVD
AGALRGLQDE LKQKLGSGVV VLAIAGEAKV NLIVGVTKDL TAKVKAGELV ASIAAQVGGK
GGGRPDMAQA GGTEPEKLDG ALEQVLPWLE ERLA
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