Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3260 |
Symbol | |
ID | 6117579 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 3997555 |
End bp | 3998682 |
Gene Length | 1128 bp |
Protein Length | 375 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641634804 |
Product | patatin |
Protein accession | YP_001761625 |
Protein GI | 170727599 |
COG category | [R] General function prediction only |
COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCAGAGA AAACAGCATT AGTTCTTGGA GGTGGTGGTG CGCGTGCGGC TTATCAAATA GGTGTGCTCA AGGCCATTGT CCAGTTCTAC CCCAGAAATC ATGGCATCCC CTTTAAGATA ATTTGCGGCA CCTCTGCTGG TGCAATCAAT GGCACTTCAA TCGCGACTCA TGCCTCCTGC TTTCATCTCG GTGTTAGAAA ACTGGAATGG GTTTGGCGTA ACTTTCGCAC CGATAAAATC TACAGTGCAT CCATGTCAGG AGTACTAAAG CATTTAGGCA AGATGCTCTT GATGAGTATG CAAGATGACA AGGTCAATAC CAATGCTGGG AGTCTATTTA ACAGTGAGCC ATTAAGGGGG TTGTTAAATG AGCTGATTAA TTTTGCTCGC ATCGATAGAA ATATTGGCAG TGGTGCGCTC AGCGCTCTAA GTATCGATAC CTCCTGTTAT AACAGCGCCC GCTCTGTCAC CTTCTTTCAA GGCAACCACG ATATAGCCCA GTGGCATAGA GACAGGCGCA GTGGTCAGCG AACTCAGCTC AATACTGATC ACTTACTGGC AAGTTCAGCG ATTCCGCTAG TATTTCCCTC GGTAAAGCTC AATCAAGGCT ATTATGGCGA TGGCTCAGTG CATCAATTGG CTCCCTTAAG CAGTCCTATT CACCTTGGGG CAAAGAAATT ATTTGTGATC AACCTTGAGA GTCCTCATAA GCAGCAGTCT CAGGAGCTTG AACATCATCC AAAAACCGCC ACCATCGCAG GTCACCTATT AGATACCATC TTCTCGGATA CACTTAACAG CGATCTGGAA AGGCTAGAGC GGATAAATAA TACCCTCTCT TTAATCCCAG AGGAGGATAC CAAAAAGCTG CCGTTAACTC AGATCCAAAC CTTGGTGATC AAACCCAGTG AAGATTTAAG TAAGCTGGCC TCACGGTATT ATAATGAGAT GCCCTTCGCA GTTAAGTCGA TGCTCAGACC TATCGGTATC AACCAACAAA CCGATTCAAG TATTGTCTCC TACCTATTAT TCGAAAAATC TTACTGCTCA GCCTTAATCG ATTTAGGGTA TCAAGATGCC ATGTGCCAAA TCGATGAGAT TAGAGATTTC TTTGAGATAG AGCAGTGA
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Protein sequence | MPEKTALVLG GGGARAAYQI GVLKAIVQFY PRNHGIPFKI ICGTSAGAIN GTSIATHASC FHLGVRKLEW VWRNFRTDKI YSASMSGVLK HLGKMLLMSM QDDKVNTNAG SLFNSEPLRG LLNELINFAR IDRNIGSGAL SALSIDTSCY NSARSVTFFQ GNHDIAQWHR DRRSGQRTQL NTDHLLASSA IPLVFPSVKL NQGYYGDGSV HQLAPLSSPI HLGAKKLFVI NLESPHKQQS QELEHHPKTA TIAGHLLDTI FSDTLNSDLE RLERINNTLS LIPEEDTKKL PLTQIQTLVI KPSEDLSKLA SRYYNEMPFA VKSMLRPIGI NQQTDSSIVS YLLFEKSYCS ALIDLGYQDA MCQIDEIRDF FEIEQ
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