| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3101 |
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| Symbol | |
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| ID | 6117417 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3798751 |
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| End bp | 3799824 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641634643 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_001761467 |
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| Protein GI | 170727441 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR02974] psp operon transcriptional activator PspF |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.701095 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000294704 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGGCAAATC AATTTCAGCA AGATAATCTT ATCGGTCAAT CGAATGCTCT ATTAGAAGTA
TTGGAGCATG TCTCTCAAAT TGCACCTCTT TCTAAGCCAG TGCTTATTAT TGGGGAACGC
GGTACAGGTA AAGAGCTTAT CGCAGAGCGT CTGCACTATT TATCTAAGCG TTGGGATCAA
AATTTTATTA AGCTCAACTG CTCCTCCTTA AGTGAAAACT TACTCGAAAG TGAACTTTTT
GGTCACGATG CTGGTGCATT TACTGGCGCG AGTAAAAAAC ATGAGGGCCG TTTTGAACGT
GCCAATGGCG GTACCCTGTT TCTTGATGAG CTCGCCAATA CCTCAGGTTT AATCCAAGAG
AAGCTACTTC GTGTCATTGA ATATGGCGAG TTTGAGCGAG TTGGCGGCAG CAAAACTGTA
CAAACAGATG TCAGACTTAT CTGTGCAGCC AATGAAGATC TCCCCTCTTT AGCTGAGGCT
GGTGAATTTC GTGCTGATCT ACTCGACCGC TTAGCTTTCG ATGTGATCAC CTTGCCACCA
CTGAGGCACC GTACCGAGGA TATCAAACCA TTAGCCGAGT ATTTTGCCAT CGGTATGGCT
AGACAACTTA AACTAGAACT GTTTGAAGGT TTCAGCCCCC ATGCGATGCA GCAACTGACG
GACTATGCGT GGCCTGGAAA TATTCGTGAA CTGAAAAACG TGGTTGAGCG AAGTGTTTAT
CGTAATGCAG ACTCTGATTC GGCAATCGAA AATATCATTC TCGATCCTTT CGCTTCTCCC
TATCGCCCAA CTAAAAGAGT GAAAACCATA GAGAGGCAGC AACCAGCTGC AAGTGTAGAG
GCAAACGATC AGCCAGCAGA GCCGAATAGT AAAGCTACGC AAACTTGCTC AACATTACCT
CCTCAGTTCC CCATCGACTT TAAAGAACAT TGCGAAGGTT TGGAGATCAC CCTACTTAAG
CAAGCATTGG AAGCTGGCCA ATACAATCAA AAGAAAACCG CTGAGCTATT GGGGTTAAGT
TATCACCAAC TTAGAGGCAT TTTAAAGAAA TATAACCTGT TGGATAAGGC GTGA
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| Protein sequence | MANQFQQDNL IGQSNALLEV LEHVSQIAPL SKPVLIIGER GTGKELIAER LHYLSKRWDQ
NFIKLNCSSL SENLLESELF GHDAGAFTGA SKKHEGRFER ANGGTLFLDE LANTSGLIQE
KLLRVIEYGE FERVGGSKTV QTDVRLICAA NEDLPSLAEA GEFRADLLDR LAFDVITLPP
LRHRTEDIKP LAEYFAIGMA RQLKLELFEG FSPHAMQQLT DYAWPGNIRE LKNVVERSVY
RNADSDSAIE NIILDPFASP YRPTKRVKTI ERQQPAASVE ANDQPAEPNS KATQTCSTLP
PQFPIDFKEH CEGLEITLLK QALEAGQYNQ KKTAELLGLS YHQLRGILKK YNLLDKA
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