| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3034 |
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| Symbol | |
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| ID | 6117349 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3718571 |
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| End bp | 3719146 |
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| Gene Length | 576 bp |
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| Protein Length | 191 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641634576 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_001761400 |
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| Protein GI | 170727374 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00396437 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0353116 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATTCGA AAATGTTTAA TTTCTCGCGA AATAAAAAAC CGACTACCAC GGTCAATTCA
GACATGGTAA GCAAACAAAG ACGATACGAT AGCCTTGTCA GGGCACTCCA TGCAGATATT
TTCCGATATG GCTATTGGCT ATGCGGTGAT AAACATGTAG CGGAGGATAT CACTCAAGAA
ACGTTTTTAC GGGCGTGGCG TTCACTCGAG TCTTTAAAAG ATGATAAAGC CGCTAAAGCA
TGGCTTATCA CTATCCTTAG ACGTGAGAAT GCTAGGCGTT TTGAACGTAA GCAGTTTAAC
TACTCTGATG TTGAGCAGGA GACCATTGAA GATCATATCT CCTCAAGCAA TGAAGATCAG
GCCGAACAAC ACCTTATTCG ACGACAGATA GCTAAACTAG AGCTTGAATA TCGCGAACCG
CTACTTCTCC AAGTTATTGG TGGATTCAGC GGAGAAGAGA TAGCTGGCAT TTTAGAGCTG
AACCGTAATA CGGTAATGAC AAGATTATTT AGAGCACGTA ACCAATTGAA AGACGTATTA
GAACAACCCC AAGTGCGAGG GCAATCCAAT GGATGA
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| Protein sequence | MNSKMFNFSR NKKPTTTVNS DMVSKQRRYD SLVRALHADI FRYGYWLCGD KHVAEDITQE
TFLRAWRSLE SLKDDKAAKA WLITILRREN ARRFERKQFN YSDVEQETIE DHISSSNEDQ
AEQHLIRRQI AKLELEYREP LLLQVIGGFS GEEIAGILEL NRNTVMTRLF RARNQLKDVL
EQPQVRGQSN G
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