Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2989 |
Symbol | |
ID | 6117304 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 3662131 |
End bp | 3664017 |
Gene Length | 1887 bp |
Protein Length | 628 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 641634531 |
Product | diguanylate cyclase |
Protein accession | YP_001761355 |
Protein GI | 170727329 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.542118 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.107456 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGATCAATA GAACAGGCCT TTTACTATTA AGCTTTTGTT TATTAATCCT TTTAACCACC ATTTCGGTCG TAAAAGCTGA TGATTACAAC ACTATTGAGA AGGTGCTAAC TGAATTAGAG AGTGGGACAA CCATCCCTCA AACTGAATTA ATCGAAAAGA TAACCTACCT AAAGAACCAA TTATCCGAAC GAGATAGCAG CTATTATCTT AGGCTTCAAG CTATTATCTG CTGGAACTAT GATGTTGACG ACCCAAAACA GAGAGCGCTT GCCATCAGTT TTGCCAACAA GCAACTCAAT AATCCTTTTA TTCAACAATC ACCTGAACAT CATCTGGATA TTCAACTCTG TAAAGCCTGG TTTAATCAAA TAGATGGCAA GGTTACACAA GCATTAAAAG AGTATGATGA GATCATTCAA CGAGCCTATC AGATAGAGTC ACTGAAGCTT ATCGCCGATG GACGTAGCAT TCGCGGCGCC ATGTACTCAT TTCAAGGAAA CTTCTCTCTC GCTCTTGAAG ATCTTATCAC TGCACAGCAT CTTTATGACA ACTTAGGCCT TAACCACTGG AGTCAAATAA ACCTGTCAGA TCTCGCCACC AGCTACCGAC GTTTCGGTGA TCCCCAAACC GCGATAAAAT ACTATAAACA GCTTGAAGCT AGGTTCATTA AACTCAATGA TATGGACGCA GCCACAGCCA TGATCACTGA GATGGCCATC GCTTACGAAG AGTTGGGGGA ATATAATAAG GCGATAGAAT ACTATCAAAA ATCCTATGAG TACTGGCAAA AACAGGGAGA CATTTTTAGC GCATCGACTA TCGCGGTTAA CATCTCAGGA AGCTTAATTA AACTCAACAG AATAACTGAG GCTCAAGAAT ATTTATCTCA AGCCAGTCCC CACATAACCT CAAAAGATGA AGCCTTCTAC AGTTTTATGA AGCTTTTTGA GGCTGAAATT AGCTTAATAG ATGAGAAACC AAGTGAAGCA CTCAACGCAC TCTTAGAAGC AAAGTCAGCT TTTAATAGAG TAAAAAACAA ACGAGGTTTA GCCCAGTTAT CACAGATTGA AAGTCAAGTT TATACCTCAC TAGGCGACTG GCCAAAAGCG CTTCAGGCAT TACAAAGATA TGTGCAACTG CACAATGAAC TTGACGCAAA AATGCAATCA AATCGCACGA CAGAGATGCG AACACGTTTT AATACCGAAC AGATTGAGAC TGAAAATAAA CAACTTATCG AATTACAAAA AGCGAGAGAG CTTGAACTAC ACATTCTTGA GCAAAATCGA TACCTTCAAT TTACTGTGAT TATACTGGCC GTTATCGTGA TCCTTTTTGT CTCACTCTTT GCTATCAAAC AGGTACAAAA GTCTAAATTA TTAGCGGTAC TGGCATTAAC CGACCACCTG ACTAAGCTCC CAAACCGTAG ACAAACTTAT TCAGAAGCAG AGAAACACTT TTCAAATAAT AACAGTAAGT TATCCCTGAT ACTGTTTGAT GCGGATCACT TTAAGAAGAT CAATGATAAT TTTGGTCATG AGATTGGAGA TAAAGTACTG TTTGAACTGG CCAATATCAG TAATCTAATG ATGAGAAGAG CCGATCTTGT CGGACGAGTC GGTGGCGAAG AGTTTCTTAT TATTTTGCCC GACACTTCGC TTGAACAGGC CATAAAAATC GCTAATAGGT TAGTGGAGTC GATCGCAAAA ACTGATCTTT CACATTTGTC TCCCACATTG TCTATATCAG TCAGTGCGGG AGTGGCGGAA AAAGAGCAAG ATGCCTCCTT CACTGAGCTA CTTAATCGGG CAGATACAGC ACTTTACCAA GCAAAAACCA ACGGCAGAAA TCGCGCTGTC TTTAATACTC AACAAACGGA TCAGTAA
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Protein sequence | MINRTGLLLL SFCLLILLTT ISVVKADDYN TIEKVLTELE SGTTIPQTEL IEKITYLKNQ LSERDSSYYL RLQAIICWNY DVDDPKQRAL AISFANKQLN NPFIQQSPEH HLDIQLCKAW FNQIDGKVTQ ALKEYDEIIQ RAYQIESLKL IADGRSIRGA MYSFQGNFSL ALEDLITAQH LYDNLGLNHW SQINLSDLAT SYRRFGDPQT AIKYYKQLEA RFIKLNDMDA ATAMITEMAI AYEELGEYNK AIEYYQKSYE YWQKQGDIFS ASTIAVNISG SLIKLNRITE AQEYLSQASP HITSKDEAFY SFMKLFEAEI SLIDEKPSEA LNALLEAKSA FNRVKNKRGL AQLSQIESQV YTSLGDWPKA LQALQRYVQL HNELDAKMQS NRTTEMRTRF NTEQIETENK QLIELQKARE LELHILEQNR YLQFTVIILA VIVILFVSLF AIKQVQKSKL LAVLALTDHL TKLPNRRQTY SEAEKHFSNN NSKLSLILFD ADHFKKINDN FGHEIGDKVL FELANISNLM MRRADLVGRV GGEEFLIILP DTSLEQAIKI ANRLVESIAK TDLSHLSPTL SISVSAGVAE KEQDASFTEL LNRADTALYQ AKTNGRNRAV FNTQQTDQ
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