| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2905 |
|---|
| Symbol | |
|---|
| ID | 6117220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 3554304 |
|---|
| End bp | 3555041 |
|---|
| Gene Length | 738 bp |
|---|
| Protein Length | 245 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641634449 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001761273 |
|---|
| Protein GI | 170727247 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00116832 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0773773 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGGAAT ATCAAGCAGC AAAAGATCTA CTTATTAACA AAACAATCCT AGTCACAGGC
GCTGGGGACG GCATTGGCCG TGCAGCTGCC ATCAGTTTTG CCAAACACGG TGCAACCGTT
ATCTTACTGG GAAAGACAGT AAAGAAATTG GAAGCTGTCT ATGATGTTAT TGAACAAGCT
GGTTACCCAA AACCTGCCAT CGTACCGCTG GATCTTAAGG GAGCAACAGA GCAGAATTAT
ATCGATATGG CTGAAACCAT AGAGCAGCAG TTTGGTCACT TAGATGGACT GCTACACAAT
GCGAGCATGT TGGGTGTACT AGGCCCGTTT GAACATATCT CTATGGATTC GGTAAAAGAG
GTTATGCAGG TAAACGTGAT TGCAGAAGTG ATGATGACAA AAGCCCTACT TCCTGTGATG
AAGAAAGCGC CGCAAGCTTC ATTGGTGTTC ACCTCTAGCA GCGTTGGTCG TCAAGGCAAA
GCATTCTGGG GAGAGTATGC AATCTCTAAA TTTGCCACCG AAGGCATGAT GCAGGCTATC
GCCCATGAAT ATGACGGTTC AAATGTACGT GCAAATAGTA TTAATCCAGG CGCTACCCGT
ACGGGTATGC GTGCTAATGC CTACCCTGCA GAAAACCCAC AATCTATCAA GGCTCCAGAG
GAGATAATGG CAACTTATCT CTACCTAATG GGCAATGACT CTCTCGAGGT TAATGGCCAG
CAGCTTAACG CTCAATAA
|
|---|
| Protein sequence | MLEYQAAKDL LINKTILVTG AGDGIGRAAA ISFAKHGATV ILLGKTVKKL EAVYDVIEQA
GYPKPAIVPL DLKGATEQNY IDMAETIEQQ FGHLDGLLHN ASMLGVLGPF EHISMDSVKE
VMQVNVIAEV MMTKALLPVM KKAPQASLVF TSSSVGRQGK AFWGEYAISK FATEGMMQAI
AHEYDGSNVR ANSINPGATR TGMRANAYPA ENPQSIKAPE EIMATYLYLM GNDSLEVNGQ
QLNAQ
|
|---|
| |