| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2902 |
|---|
| Symbol | |
|---|
| ID | 6117217 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 3549164 |
|---|
| End bp | 3550189 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641634446 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001761270 |
|---|
| Protein GI | 170727244 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000829875 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0371482 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTACG TCCAAAGTTA CAAGAGGAAT ATGTTGGTTG GTGATCAATC ATATCCTGCT
TATCAACTAC GAAACCTGCT TAACTACCTT AAGGTACATT ATGGTGATGA GGTCGTTGAT
AAATTATGCT CGCAGATAGG GCTTGGAATC TCTGAATTAG AGCACCTACA ACTCATCTAT
GTTTGGCAGG CCGACTTTGC GATGGAGTTT CTACAGCAAT ATACCCAAGA CCCTGAGATA
GGTGCCAAAG TGGGCAGTCA GTATCTGGTG AAAGATCTGG ATTTTCTACT GACTTTTTTC
AATCAATGCA AAACCATAGG CGAATGTCTG CAGTTCGTGC TCTCTCATCC CGAGCGGGTA
GGAAGCTTTA CCGATACTTT AGTGACTAAT GAAGATGGCG AGCTTCGTAT ACGTTGGCTT
AATACCGGAA GAATTAATAG AGAGCGTTAC TCCTGTCAGT TTCAACATAG TGTGTGTGGT
TTAGTCAAAA TAGGTTGTGG GTTAGCCGGT CAAACTATCC GCTTTGGGCG AATATCATTA
GCTGAAGAGG AGCGCGATGC GAGTTTTTTA GCTTCAGTGA CCGGCGCTGA TGTGCAGTTT
GCTTCAGAGT TTAATGAGTG GTCGATAGAG CATAAATATC TTTCGCTACC TGTGACCTAT
GATTTTGACA AAAACCTGAT TAATACGGTT TCAAATCAGC AACCTTCCTA TATTGAACAC
CTGTTAGATC AACTAAGGAG CTCTTTTCCT GATTGCCCCA ATATGGAGCA GATGGCCGAA
ATACAAAATA TCAGTTCAAG AACCTTGAGG CGTAAGATAT CTCTGGCGGG TAGTAGTTAT
CAGAAGTTGG TCGATCAGGT TCGATCTCAA GCCGCCATCG GTCTTATCTT GTCAGAAGAG
CATAAGGTTG AGGACATTGC CGAGGTGATG GGATTTGGCG ATGTCAGTCA TTTTCGGCAA
AGTTTTAAAC ATTGGCTAGG TCATCCACCT GGTCATTTCT TGAGGCTTAA CGAGAAGGCT
AAATGA
|
|---|
| Protein sequence | MKYVQSYKRN MLVGDQSYPA YQLRNLLNYL KVHYGDEVVD KLCSQIGLGI SELEHLQLIY
VWQADFAMEF LQQYTQDPEI GAKVGSQYLV KDLDFLLTFF NQCKTIGECL QFVLSHPERV
GSFTDTLVTN EDGELRIRWL NTGRINRERY SCQFQHSVCG LVKIGCGLAG QTIRFGRISL
AEEERDASFL ASVTGADVQF ASEFNEWSIE HKYLSLPVTY DFDKNLINTV SNQQPSYIEH
LLDQLRSSFP DCPNMEQMAE IQNISSRTLR RKISLAGSSY QKLVDQVRSQ AAIGLILSEE
HKVEDIAEVM GFGDVSHFRQ SFKHWLGHPP GHFLRLNEKA K
|
|---|
| |