| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2703 |
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| Symbol | |
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| ID | 6117002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3308496 |
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| End bp | 3309203 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641634234 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001761074 |
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| Protein GI | 170727048 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.011903 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAGTCACA CAATTAAACA AAAGTCTCAA TCAAAAAGAG CGACCACAAC CTCCAAAAGA
GGCGATCAGA AGCGAGCTTC TTGGTTTAAC AAAAATCAGC CAAAATCTAA AGCTCCTCAA
ATGCGTACTG GTAAAGGCAA AACTGTTGAA CCTGTTATCG TTCTTTTTAA TAAGCCCTTT
GACGTGCTGT GCCAGTTTAC CGATGAACAG GGACGTCAAA CATTAAAAGA CTTTATCCCT
ATTCCCGGCG TATATGCAGC AGGAAGACTC GACAGGGACA GTGAAGGACT GTTACTGCTT
ACCAATGACG GTAAACTTCA ATCTAAACTC ACTGAGCCTA AAAAAAAGAC ATTCAAAACC
TATTGGGCGC AAGTTGAAGG CGCACCAGAT GAAGCTCAAT TAGATCTGTT ACGTAAGGGC
GTCGAACTAA AAGATGGCAT GACGCTACCT GCAAAAATCA GCATCATGTC GCAACCTACT
GTTTGGGAAC GTGTTCCACC GATCCGAGAG CGTAAAGCTA TCCCAACCAC TTGGTTAGAG
ATCCAGATCT GTGAAGGGCG TAACCGTCAA GTAAGAAGAA TGACTGCCCA TATCGGTTTT
CCAACGCTCA GACTCATTCG CTATAAAATA GGTCAATGGA GTCTTGATGA TCTCAGTCCA
GGTCAATACC AGAGTATTGA TATGAAAAAT AAAGCCGTAT GTCAGTAA
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| Protein sequence | MSHTIKQKSQ SKRATTTSKR GDQKRASWFN KNQPKSKAPQ MRTGKGKTVE PVIVLFNKPF
DVLCQFTDEQ GRQTLKDFIP IPGVYAAGRL DRDSEGLLLL TNDGKLQSKL TEPKKKTFKT
YWAQVEGAPD EAQLDLLRKG VELKDGMTLP AKISIMSQPT VWERVPPIRE RKAIPTTWLE
IQICEGRNRQ VRRMTAHIGF PTLRLIRYKI GQWSLDDLSP GQYQSIDMKN KAVCQ
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