| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2621 |
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| Symbol | |
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| ID | 6116920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 3204256 |
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| End bp | 3206208 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641634153 |
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| Product | lytic transglycosylase catalytic |
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| Protein accession | YP_001760993 |
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| Protein GI | 170726967 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.327163 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.230885 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGTTAA TTAACACTTT CAAGCAGGTT TTATCTAATG CGTTGCGTTT ACCAGCGCTA
CAATCTGCGA TTTTATGTTT AGCGGTCATA AATTTAGCTC ACAGCGCACC ACTTACCCAG
GAGCAGCAAA CTTACCTTGA TGCACGTAAG GCATTAGATA AACGTCAAAC CGAAACCTAC
ACCCGTTTAA GGGCAAAACT CGATGATTAC CCCCTAAATG TCTATCTCGA TTTTCATGCC
GATATCAATA GCATCTTAAC CCTTAAAGGC AAACAGGCCG AGCAATCCAT CAAGCAGTTT
AAGGATACCC CTCTTTATAA TACTGCCAGA TACCGCTACC TCAATCGCGC CGGCGCTCAA
AAGCGCTGGA GTGACTTTTT AGTCGTCAGT CCAACCTCAC CTAAAAGCGT TACCTTACAA
TGTTATTTCT ATCGTGCTCA GCTCTCACAA GGCGATAAAG CAGCTGCATA CAAGGGCGCA
AAGTCACTTT GGTTATATGG AAAATCACGG CCTAAAGAGT GTGACCCACT GTTTAAAGCC
TGGGGAAAGA CTGGCGAGAT CACCCAAGAG TTAATCTGGT CACGTATGTT ATTAAGCTTT
AATGCGAATC AATATGGCTT ATTAACTTAT CTATCACGTA AGATCACGAC TCAGAAAAAA
GCCGCCAAAA GGCTGCTGAG CGTCTATAAA GATCCCAGAA GTCTACGCCA TACTCGCACC
TTCTCATCAT CGGCAAAGAT CTATGCAGAT ATTGTCGATG CTGGCCTGCG TAAGTTGGCG
AGAAAAGATC TAAAGCAAGC AGTAAAATTG TACGCCAGTT ACCAAAAAGC CGATAGATTC
AGTGATTATC AGGGTAGAAA ACTGAGCCGT TACTTGGTTA GACGAGCCGT GATCCGTCAA
GATGATGGAT TAAAGAGCTT TGTCGATACC ATGCTGCCTC TGCTAGATAG TGATGATCTG
GTTGAACTCA GACTCAGATG GGCCATTCGT GAAAATGATC AGCAAGCTAT AAGCAGCTAC
TTACCTCAGC TTAGTGCGCA AAAACAGGCT AAATCAAGGT GGCAATATTG GCTAGCCAGA
GATGCGGACA GAAAAGGCAA TCTTGATCCG GCAAATCTAG AAAACCTAAG CCAACAGCGC
AACTTCTACG GCTTTTCAGC AGCCGATAAA TTGGACTCAG AGTATCAGTT GCAAGATACC
TTATCTGTCA GTGACCCCAC ACATCATCAA GAACTCAACC TTGATAAAGG GCTCGCGAGA
GTGATTGAAC TCCTTGCGCT GGATAAAAAT ATTGATGCCA GAGCTGAATG GGTACTAATG
CTCGGCAGGC ATGACAAAGC CATGCAGAAA GAGTACGCAG TGTTAGCATT AAAAAACCAG
TGGCACTCTT TGGGCGTACA AGCCAGTATT CAAGGGAAGT TGTGGAACGA TATGACAATC
CGTTTTCCCT ATGCAGCAGA CAGTGAGTTT ATTAAAGCCA GCAAGCGATA TAAGGTCGAT
ATCGATGAGA TAAGAGCTAT CGCCAGACGA GAGAGCGCTT TTTATCCTTA CGCTACCTCA
GGTGTTGGTG CTCGAGGCCT GATGCAGCTA ATGCCAGCAA CAGCAAAAGA GACAGCAAAG
AGGTATAAAC TCAAGTACAA AGGAACACGA AGCTTGTATC ACCCAGATAC AAATATCCCC
CTTGGCAGTG CCTATTACTC TTCACTGCTC AAGCAGTTTA ACAATAATCG AGTGCTTGCG
ACCGCAGCCT ATAACGCAGG TCCACACAGA GTAAAACGTT GGCTTAAAAA GTCCGATGGT
CAATTAGATG TTATCGCGTT TATCGAGTCA CTTCCCTTCA CCGAAACTCG TGAATATGTG
CAAGCAGTAT TAAGTTACCG GGTGATCTAT CAGATTAAGC AAAACAAAAT TCCTGAACTG
TTTTCAGCTG AAGAGCTCAA TTACAAATAC TGA
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| Protein sequence | MRLINTFKQV LSNALRLPAL QSAILCLAVI NLAHSAPLTQ EQQTYLDARK ALDKRQTETY
TRLRAKLDDY PLNVYLDFHA DINSILTLKG KQAEQSIKQF KDTPLYNTAR YRYLNRAGAQ
KRWSDFLVVS PTSPKSVTLQ CYFYRAQLSQ GDKAAAYKGA KSLWLYGKSR PKECDPLFKA
WGKTGEITQE LIWSRMLLSF NANQYGLLTY LSRKITTQKK AAKRLLSVYK DPRSLRHTRT
FSSSAKIYAD IVDAGLRKLA RKDLKQAVKL YASYQKADRF SDYQGRKLSR YLVRRAVIRQ
DDGLKSFVDT MLPLLDSDDL VELRLRWAIR ENDQQAISSY LPQLSAQKQA KSRWQYWLAR
DADRKGNLDP ANLENLSQQR NFYGFSAADK LDSEYQLQDT LSVSDPTHHQ ELNLDKGLAR
VIELLALDKN IDARAEWVLM LGRHDKAMQK EYAVLALKNQ WHSLGVQASI QGKLWNDMTI
RFPYAADSEF IKASKRYKVD IDEIRAIARR ESAFYPYATS GVGARGLMQL MPATAKETAK
RYKLKYKGTR SLYHPDTNIP LGSAYYSSLL KQFNNNRVLA TAAYNAGPHR VKRWLKKSDG
QLDVIAFIES LPFTETREYV QAVLSYRVIY QIKQNKIPEL FSAEELNYKY
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