| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2324 |
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| Symbol | |
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| ID | 6116595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 2856406 |
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| End bp | 2857851 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641633830 |
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| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
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| Protein accession | YP_001760698 |
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| Protein GI | 170726672 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0081323 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0602445 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGCGTTA TTCGACACCT TACGCGAGCA GCCCTGCTCA CCTGTTTTAT CTCATCCCCC
ACATTAGCTG AGGGGTATTT CAGTAATTTA CTAAGCCTGA TTAAACCGCC CCACTCACAC
ACTGCGCTTT ATGCCAAGAA TCTAGTGACA GATCAGGTGG TATTTGAGGA AAATGCCGAT
ACTTTACTGT TACCCGCCAG TACACAAAAA TTACTCACTG CAGTTGCTGC TACTGCGCAA
CTTGGTGATG ACTTTACATT TAACACAGAG CTCTACTCTC GCTACCCAAT CAGGGATGGG
AAAGTCACTG GCGATCTTTT CCTCACATTC AGTGGCGACC CTACATTGAC CACCCAAGAT
CTTCGCGGTC TATTCAAACA ACTTGAAGAT CTTGGTGTCA GTAAAATTAA CGGCGATCTG
TACCTAGTGG GTGACAGTAA TGAACAGCTT CAAGCCCCTG GTTGGGTATG GGATGATTTA
GGGATCTGTT TTGCTGCGCC AGTGTCTCAG TTTGTGATCA ATCAAAACTG CGTTCATGGT
CAACTTAAGC CTATGCTTGC CAGTAACAAG AGCCAACTCA GCTTTGCCAG TTACCTGCCA
GTTAAATTTT ATAATTCAGC CATTTTTGAC AAAAATAAGC AGGAGACTTT TTGCGATCTT
GAACTGAAAC GCTTGGCCAA TAATCAGTTT CAGCTCAGTG GTTGCTACCC TGGTAGCAAA
AACATCAAAC TGGCTGTAGC GATATCAGAT CCAGCCCTCT TTGCAAGCGA TACCCTAAAG
CAGATTATTG CCAGTAGTAA AATCAAACTC ACAGGGAGTG TAAAACTCAG CAATGTGAGT
CCAAATTATG CAAACATCAT CGCTAAACAC AGCTCTCAAA CGCTTCCTCA GCTGCTTGAA
ACCATGTTAC TGAAATCAGA CAACCTAATA GCTGATAGTC TGTTAAAACA GATCGGGCAG
TCATACTATA AGAGTGCAGG CAGTTTTAAA AATGGCAGCC GAGCTATGCG TGAGATCCTG
ACCCAAGCAG GTGTAGACCT TACCCATGCG CAAATTGTTG ATGGTTCAGG TTTATCTCGT
TACAACCTGC TTAGCGCTAA GCAGTTAAGC CAAGTATTAG GACTTATATA CACAGATAAA
CGTTTTATGG GCTTACTTGA CTCCTTACCT TTGTCAGGAG TTAGTGGCAC CTTGCAATAC
AAGTCATATT TTAACCGAAA ACCTTTAGTG AATTATGTTT ACGCCAAAAC TGGCTCTATG
CAGGGGGTGG ATAATTTGGC GGGGTTTATT AAGAAGCCCT ACTTCGATGA TACTTTATTT
GTGGTATTAG AAAATGGTCA GAGTCCGCTA GAGAAGAAGG AGCAAATCGC CCCCTTCAGT
GCCCTATTTT TACAAACTCT GCTGGATTAT GAACCGAGTA AGGTAACCAG CTCCCTTTCC
CACTAA
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| Protein sequence | MCVIRHLTRA ALLTCFISSP TLAEGYFSNL LSLIKPPHSH TALYAKNLVT DQVVFEENAD
TLLLPASTQK LLTAVAATAQ LGDDFTFNTE LYSRYPIRDG KVTGDLFLTF SGDPTLTTQD
LRGLFKQLED LGVSKINGDL YLVGDSNEQL QAPGWVWDDL GICFAAPVSQ FVINQNCVHG
QLKPMLASNK SQLSFASYLP VKFYNSAIFD KNKQETFCDL ELKRLANNQF QLSGCYPGSK
NIKLAVAISD PALFASDTLK QIIASSKIKL TGSVKLSNVS PNYANIIAKH SSQTLPQLLE
TMLLKSDNLI ADSLLKQIGQ SYYKSAGSFK NGSRAMREIL TQAGVDLTHA QIVDGSGLSR
YNLLSAKQLS QVLGLIYTDK RFMGLLDSLP LSGVSGTLQY KSYFNRKPLV NYVYAKTGSM
QGVDNLAGFI KKPYFDDTLF VVLENGQSPL EKKEQIAPFS ALFLQTLLDY EPSKVTSSLS
H
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