| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2295 |
|---|
| Symbol | |
|---|
| ID | 6116566 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2818747 |
|---|
| End bp | 2819874 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641633801 |
|---|
| Product | peptidase M14 carboxypeptidase A |
|---|
| Protein accession | YP_001760669 |
|---|
| Protein GI | 170726643 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2866] Predicted carboxypeptidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00080179 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.434754 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGATCA GCGCCAATTT TGATGGTGGA AATATTGAAG TCATCAATCA AGATAATATT
AAAGATGTGC AACTGGCTAT TCGTCCCGAT GTTGGTGACG AGTTTTATCA GTGGTTCAAT
TTTCGTTTAG AAGGCGAAGT AGGAAGCCAG TACCTACTTA ATATTATGAA TGCTGGTTCA
GCTTCATACC CTAAAGGTTG GGAAAATTAC CAAGCCGTAG CGACCTATGA CAGGCAGCAG
TGGTTTCGCC TTCCAACTGA GTACAAAGAT GGTAAATTAA CCATTCAAGT TGACCTTGAT
TGTGACTCAA TCCAAATAGC TTATTTCGCT CCCTACAGTT ATGAACGCCA CCAAGATCTT
CTCGCTTCAG TCCAAGTCCA CCCATTAGTC AGTCTCGAGC ACTTAGGTTT AACCTTAGAT
GGCCGAGATA TGACACTGGT GAAAGTGGGT GATGGTGATG AATCTAAAGC AAATATCTGG
ATCACAGCGC GTCAACATCC AGGTGAGACG ATGGCTGAGT GGTTAGTCGA AGGCTTCTTT
AACAGCTTGC TCGATAGTGA CAACGTCAAT GCTCAGGCGC TACTAGACAA AGCAAATTTC
TATATTGTTC CTAATATGAA TCCAGACGGA AGTGCACGTG GTCATTTGAG AACCAATGCA
CTGGGTGTTA ATTTAAATCG TGAATGGCAG ACCCCTTCGC TTGAGAAGAG TCCAGAGGTC
TTCTACGTCA CCAATAAGAT GAAAGAGACT GGCGTGGATC TCTTCTATGA TGTCCACGGT
GACGAAGGTT TACCTTATGT CTTTCTTGCT GGCTGTGAAG GCGTACCTTC ACATGATGAG
CGCATGGCCA AACTGCAGCA AAAGTTTGTT GACGCACTAA CACTGGTCAG TGCCGATTTC
CAGTCTGAGT TTGGTTATGA TAAAGATGAG CCAGGCAAAG CAAACCTAAC GGTTGCCTCT
AACTGGGTCG CTGAAACATT TACCTGCCTC TCTAATACTC TTGAGATGCC GTTTAAAGAT
AATGACAATA TGCCAGATCC TATGTCAGGC TGGTCTCCAG AGCGCTCTAT CTATCTAGGT
GAGGCATCTT TAATCGCAAT GTTAGCGGTA GTGAATAACT TACGATAA
|
|---|
| Protein sequence | MRISANFDGG NIEVINQDNI KDVQLAIRPD VGDEFYQWFN FRLEGEVGSQ YLLNIMNAGS
ASYPKGWENY QAVATYDRQQ WFRLPTEYKD GKLTIQVDLD CDSIQIAYFA PYSYERHQDL
LASVQVHPLV SLEHLGLTLD GRDMTLVKVG DGDESKANIW ITARQHPGET MAEWLVEGFF
NSLLDSDNVN AQALLDKANF YIVPNMNPDG SARGHLRTNA LGVNLNREWQ TPSLEKSPEV
FYVTNKMKET GVDLFYDVHG DEGLPYVFLA GCEGVPSHDE RMAKLQQKFV DALTLVSADF
QSEFGYDKDE PGKANLTVAS NWVAETFTCL SNTLEMPFKD NDNMPDPMSG WSPERSIYLG
EASLIAMLAV VNNLR
|
|---|
| |