| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1726 |
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| Symbol | |
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| ID | 6115967 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 2144078 |
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| End bp | 2145112 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641633208 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_001760106 |
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| Protein GI | 170726080 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.075915 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.25879 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTAACC GATACCTACC AGCTCAACTG CAATCACTCG CACGCTCAAT AAAAGCCTTT
GTTAAGCTCT CAACAATCAC AACCATGTTG GTCTCTAGCA GCCAAGTATT CGCAGCACCT
GTAGAGATAA AGTTCTCTCA TGTCGTGGCA GAAAATACCC CTAAGGGGCA GATGGCTCTC
AAATTTAAGG AGTTAGTAGA GCTGAGACTA CCGGGTGAAT ACCAAGTTAA CGTCTTTCCA
AACTCGCAAT TATTTGGCGA CAACAACGAA GTGGCCGCCC TATTACTAAA CGATGTACAA
TTTGTCGCTC CCTCTTTGTC TAAGTTTGAA CGCTATACCA AGAAATTACA GATCTTCGAT
CTACCTTTTC TTTTTAGCGA TATGGAAGCA GTTAATCGCT TTCAGCAAGG TGAGTCGGGC
CAAAAGTTAT TGGGTTCGAT GAAACGTAAA GGTATTGTCG GACTGGGTTA CCTGCATAAC
GGTATGAAGC AGTTATCGGC AAGCAGTCCG TTAATATTAC CCACAGATGC AAGCGGTAAA
AAATTCCGAA TCATGGCATC TGATGTACTT GCCGCACAAT TTCAAGCTAT AGACGCCATT
CCAGTAAAAA AACCTTTCTC TGAAGTTTTC ACCTTACTGC AAACCCGCGC TATCGATGGT
CAAGAAAATA CCTGGTCAAA TATTTACTCT AAAAAGTTTT ATGAGGTTCA AAGCTACATT
ACTGAGAGTA ATCATGGCGT ACTTGATTAC ATGGTCGTGA CTTCAAATAC CTTTTGGAAA
AGTCTTCCAG CCGATAAGCG AACCATCATC AAAACAGCCC TAGACGAGGC CGTAGCTTAC
GGTAATGAGA TCGCTGCCGC CAAAGTCAAT AAAGATAAAG AGACGATTGT CGCCTCAAAG
CGTTCCGAAG TAATTCAACT CTCTCCAGAA CAGCGCCAGC AATGGGTTAC CTCAATGAAG
CCCGTATGGT CACAGTTTGA GGCCAAAATA GGTAAAAACC TTATTCAAGC GGCAGAAGCA
TCTAACAAAC AATAA
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| Protein sequence | MTNRYLPAQL QSLARSIKAF VKLSTITTML VSSSQVFAAP VEIKFSHVVA ENTPKGQMAL
KFKELVELRL PGEYQVNVFP NSQLFGDNNE VAALLLNDVQ FVAPSLSKFE RYTKKLQIFD
LPFLFSDMEA VNRFQQGESG QKLLGSMKRK GIVGLGYLHN GMKQLSASSP LILPTDASGK
KFRIMASDVL AAQFQAIDAI PVKKPFSEVF TLLQTRAIDG QENTWSNIYS KKFYEVQSYI
TESNHGVLDY MVVTSNTFWK SLPADKRTII KTALDEAVAY GNEIAAAKVN KDKETIVASK
RSEVIQLSPE QRQQWVTSMK PVWSQFEAKI GKNLIQAAEA SNKQ
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