| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1527 |
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| Symbol | |
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| ID | 6115767 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1902176 |
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| End bp | 1904104 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 641633011 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001759910 |
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| Protein GI | 170725884 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.086696 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0345548 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAATA TTGTGCTCAA AAATAGTATG ACTTTTGATA TCTCGTTTCG TTATAGCATG
CGGTTAAAGC CAGGGGAGTT TGTAAGACAA TATTGGCCAT TGTTAGTCGC TTTTTTAGGC
CGTAATCTTC ATAAACTTTT TAATTTTAGT TTGATTGTAT GGGTAGTTTG TCCAGCTAGT
GTGATGGCTG ATTACTCTAC ACACACTGCT CATCATAATA GTCAAATCAA TAGAGAAACT
ATAGATGAGT CGCTAAGTTC ATTAGAGCTA ATTCGTTCTC AGTCTCCTGA GGTTGTTTCA
AATCAGTTAT TAACTCTCTC ACCAAAGTTT GATGTGATGA ACCGGGAGCA GCAATACCGC
TTTACTCTGC TCCAGTCCCA CTCATATGCA TTATCTGGAG ATTACTTGGG AGCCTCTGGT
CCCTTAATTA CACAGCTAGC AAAGCCATTT AGTGAGAAAA ATGCAAAATA TCGTATAAGT
ATGATGACTT TACTGACTAA TATTTATTCT CACTTCGATT ATTATGCTGA TGCTTTGAAA
ACGTTACATC AATTATTGCC TCTTCTAGCC GATGTTGATG ACATAGAGGC GAAAGTTCAT
GGATATATTG TCGCTGCTGG AATATTTGGG AAAATAGAGC TACATGAGGA AGCGCTCAAA
TATAGCCGAG CACTATTTTC AAAAATTGAT AAGATGAAAT CGGCAAGAAA CCAGTGTTTT
GCCTTGTATA GTTATGTCGA CAGTATTCAT GTTGCTTACG GTGATGATGA AGCTAGATTT
TTACAAATAC AATCTCTTTA TGGCGATCTT TATAGGTATT GTGCTATCGC TAATGAGAAG
ATGATCATGA GTTCTTCCCT ATTAGGTCAA GCGAAGATTT TGTTTTATTT AAAAGATTTC
AATAATGCTA GAAAGAAAAT AGATGAAGCG ATCACACTAT CAACAGAGAT CCCTTATTTA
CTAGATATCG CAAGAGCTTA TATATTATTA TCGGAAATAG AGAGAGCTGA AAACAATAAT
AAGCTGGCTT TAATCTATAT TAATAATGCA TTAGAGGCAG CTTTGAAAGT AAAGGAAGAG
GAGGTGATTT TATTAGTCTA TAAGTCACTT TCTGAGATTA ATGAAAAACT GGGAATGACA
GATAAAGCTT TGGTACACCT AAAGCTTCAC CAGCAATACC GTGAGAAAAT ATTAGACAGA
AACCATAACG CAGTCATTGC TTTTGAGACG ACAAAGCTTG ATTACCTAGA GAAAGAGCAT
CAGATACGTT ACCTCAATAA AGACCGTGAG CTTTATACCG CAAAAGCCGA ACTAGCTGAA
TCCCAACGCA ATAACGAACG TATGATGCTT ATTCTGATCT GTGGCTGCTT AGTGGTATTG
ACCCTGTTTG CTATTAATAT GACGCTACAG AAACGTAAAT ATATGAGGCT AGCGCAATTT
GATGTATTAA CTGGCATCTT TAATCGAGGA ACTGGACAGA ACTTAGCTGA AAACAGATAT
ATTAAAGACT CTATGTCGGG CACAGATTTT AGTGTAATTT TGTTTGATCT GGACGATTTC
AAGAGGGTGA ATAATAACTA TGGTCATGCA ATGGGAGACT GGGTGCTTAA GAAGGTCTGT
GAAGTGGTCA ATAAAGAGTG CCGCAGTAGT GATATATTTA CCCGTTTTGG TGGTGAAGAG
TTTGCTATCT TTATGCCAAA CACCAGTGAA AGTGTAGCAA GAGAGGTAGC CGAAAAATGT
AAAGCACGGG TTTTGGCCAT TGATACTCGC TATTCAGGCC ATGAGTTTAC CATTAGTGCC
CGTTTCGGTA TTTCAACTAG TACAGAAAAA GATTTAAGTC TCGACCCTAT ACTGCAACGT
GCAGATATCG CCATGTATCA ATCTAAACAG CAAGCTAGAG AGCGTGTCTC TGTTTATACT
CCGGAATAA
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| Protein sequence | MPNIVLKNSM TFDISFRYSM RLKPGEFVRQ YWPLLVAFLG RNLHKLFNFS LIVWVVCPAS
VMADYSTHTA HHNSQINRET IDESLSSLEL IRSQSPEVVS NQLLTLSPKF DVMNREQQYR
FTLLQSHSYA LSGDYLGASG PLITQLAKPF SEKNAKYRIS MMTLLTNIYS HFDYYADALK
TLHQLLPLLA DVDDIEAKVH GYIVAAGIFG KIELHEEALK YSRALFSKID KMKSARNQCF
ALYSYVDSIH VAYGDDEARF LQIQSLYGDL YRYCAIANEK MIMSSSLLGQ AKILFYLKDF
NNARKKIDEA ITLSTEIPYL LDIARAYILL SEIERAENNN KLALIYINNA LEAALKVKEE
EVILLVYKSL SEINEKLGMT DKALVHLKLH QQYREKILDR NHNAVIAFET TKLDYLEKEH
QIRYLNKDRE LYTAKAELAE SQRNNERMML ILICGCLVVL TLFAINMTLQ KRKYMRLAQF
DVLTGIFNRG TGQNLAENRY IKDSMSGTDF SVILFDLDDF KRVNNNYGHA MGDWVLKKVC
EVVNKECRSS DIFTRFGGEE FAIFMPNTSE SVAREVAEKC KARVLAIDTR YSGHEFTISA
RFGISTSTEK DLSLDPILQR ADIAMYQSKQ QARERVSVYT PE
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