| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1523 |
|---|
| Symbol | |
|---|
| ID | 6115763 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 1897957 |
|---|
| End bp | 1898460 |
|---|
| Gene Length | 504 bp |
|---|
| Protein Length | 167 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641633007 |
|---|
| Product | SmpA/OmlA domain-containing protein |
|---|
| Protein accession | YP_001759906 |
|---|
| Protein GI | 170725880 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2913] Small protein A (tmRNA-binding) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.512522 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00464967 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACAATTA AAAAGAAAAG TCTTACCCTT TTGGGCGCTG CTGCGCTCTC GTTATCCATG
ACTGGATGTG GTGTATTTGA CTGGTTGATC TATAAACCAG ATATCCCCCA GGGTAACTAT
ATGGAGACTC AACAGGTAGA AAAACTACGT GTGGAAATGA CCAAAGAGCA GGTTGAATAT
ATTCTTGGGC GCCCAGTGCT ACGAGATAGC TTCGCCGACG ACACTTGGTA CTATGTTTAC
CATTATAAAA GTGGTCGCGA TGCCAGTATT ACTCATAAAG AGCTGATCAT CCATTTTGAT
AATGACCAGT TAACTAAAGT TGTTGGTGAT TATGAATTAT CAGAGGAGTT CAATACACCT
CTGGAGCAGA GTCGACTCCC TGATGCACCG CTCATCGAAG AGGTAGAACA GATCGACCCT
TTAATTCCCG AGCAGCGTCC TGACGCAAAG CCTCTTGTTG AAGAGAATGA TCCCGAAGCT
CAGGCCAGTA AAAAGTTCGA ATAA
|
|---|
| Protein sequence | MTIKKKSLTL LGAAALSLSM TGCGVFDWLI YKPDIPQGNY METQQVEKLR VEMTKEQVEY
ILGRPVLRDS FADDTWYYVY HYKSGRDASI THKELIIHFD NDQLTKVVGD YELSEEFNTP
LEQSRLPDAP LIEEVEQIDP LIPEQRPDAK PLVEENDPEA QASKKFE
|
|---|
| |