| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1275 |
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| Symbol | |
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| ID | 6115510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1615234 |
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| End bp | 1617273 |
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| Gene Length | 2040 bp |
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| Protein Length | 679 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641632758 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_001759662 |
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| Protein GI | 170725636 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0693701 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTCTA CAGCGTTTAA AGAATTCTCT CAAACGGATC TTAATCCTTT GTGGCCTAGA
TTACTGGCTG AGTTAGGAAA ATTACAGGCT GATTTTATTA ATGGGGAGGA TGTTCTGCTT
CCCCTCTGTC GAGTCTTAGC TGAGCTCAGC CAATCCCAAG CCGTATTAAT ATTCCCTAAA
GACAGATTCG ATTCTGAAGA TATGCCAGCG TGCACAACCT GCTGGTGCCG CGATCCTGTT
CGCTATTTAA CCCTATGGAA AGAGGCCAAG GAATGGCCAT TTATGAATCA GGAACCCACT
GTTCATCGCT GGCAATCGTT TGTTATCTGG CCGGCTAAAA GAGTCAATAT TCAGATATTT
TTCCACTCAG CAAGTGAGGA GTGGTTGTCA TTTCTATTAT CGTCAAATGA AACGCTGTCA
GAGATCATCA TGGGGATGTT GGCTCAACAA TCCGGTGAAG AGCGGGAGAG TGTAAGAGCT
CGAGTGACAT CAACAATTGA CACTGAGATG TTCCAATCGA TCGTAAGTAA CAGTGAAGAT
CTTATTCTTG TGGCAAGTCG GTCACCTTTT GGTGTACCTA GCATCATGTA CTCTAACGCT
GCAGCGACCA GTGTCAGTCA CTACCCCAGA AGCCAGTTGA TTGGTAAGCC TATTACGATG
TTATTTGAGT CTGGACTGGA GGGTGATGAG GAGAATCAGT TACTGCAAGC GATTAACTGC
CGCACCGATT TCGATGGTGA ACTTGTCTGC ACAACAGCAA ATAATGAGGA AGCTTTACTG
CATATGCACT TAGTCGCACT GGAGGAGACG AGTGGGCATG GCAGTTTATT TGCTTTGGTT
GGTCGGGATA TCACCGAGCA AAAGCAGTTA CAACATATCA TGGCTAGAAC TCAAAAAATG
CAAGCTATGG GGCAGTTGGT GGGAGGTATA GCTCATGACT TTAATAACAT ATTGGGTGTG
CTTAAGGGAA ATCTAGAGTT ATTGGAGTTA AAGATCACAG AGGAGAAGCT ACTGCGTTAC
CTTAAAAATG CGTTTAAAGC GTGCCAAAGA GGTACCGATC TTACTCGGCG TTTGCTGCAA
TTTTCAAGGC AGGAGCAATT TAGCGCGCAT CACTGTCAAG TTAATGAGGT GATTGGTGGC
ATGGAAGAGC TGCTAGGTAA ATCACTCACG ACCCAGATAA AGCTAAAAAC GGAAGTGAAT
AAAGATATTG CAGATATCTA TGTTGATCGC GGCGATCTAG AAGATGCGCT TCTTAATCTG
GTGTTAAACG CTAAAGACGC GATGGGTGGA GAGGGAGATA TCTTGATTAA AACAGATATC
ACCTATTTGA GTGGTTTACT CCCTGGCATA ACAGGGAGCC CTCAGGTTGA AGAGGGACAG
TATGTCACTG TGTCTGTGAC TGACTCTGGT TGCGGGATCC CCGCCCATCT TTTAGAGAAA
ATCTTTGAGC CTTTTTTTAC CACCAAAGAT AAGAGTAAAG GCACCGGACT TGGATTATCT
ATGGTGTATG GCTTTGTTAA GCGCTCTAAA GGTTATATGA GCGTGATGAA ATCCGATGAG
CAGGGAACCG AGTTTTGTCT TTGGTTTCCT GTGACTAAGC AAGCAATAGT CGAAGAGATA
AAGAAGGATG AGCGGATAAA GGTGCCTGTG GTCGCGAGTA AGCTTAAGGT ATTGATTGTT
GACGATGAAG TTGAGCTGCT CAATGTATTA AAGGATTACT GTGAATTGTT AGGAATGGAA
GTTGAGTCCT GTAATGATCC TTTAGAGGTG AGAAGACGCT ATAGCAGTGG CCTAGGGGAT
ATTAAGTTAT TGATCACCGA TGTGTTGATG CCAGGTGGGA TAAATGGTTA TGAACTGGCT
AAAGAGCTAT CGGCAGATGC TGAGCTTTCC GTGTTGCTGA TATCGGGCTT TATCGGTGAT
ATCGGTATCA ATAAAAATGA AGATATGCCC TATCGGGTGT TACATAAGCC CTTTGATCTG
GAGGGACTTG TGGACTCTCT TGAGCAGGTG GGGATTGAGT TTACTTGCGC TAGTGAGTAG
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| Protein sequence | MDSTAFKEFS QTDLNPLWPR LLAELGKLQA DFINGEDVLL PLCRVLAELS QSQAVLIFPK
DRFDSEDMPA CTTCWCRDPV RYLTLWKEAK EWPFMNQEPT VHRWQSFVIW PAKRVNIQIF
FHSASEEWLS FLLSSNETLS EIIMGMLAQQ SGEERESVRA RVTSTIDTEM FQSIVSNSED
LILVASRSPF GVPSIMYSNA AATSVSHYPR SQLIGKPITM LFESGLEGDE ENQLLQAINC
RTDFDGELVC TTANNEEALL HMHLVALEET SGHGSLFALV GRDITEQKQL QHIMARTQKM
QAMGQLVGGI AHDFNNILGV LKGNLELLEL KITEEKLLRY LKNAFKACQR GTDLTRRLLQ
FSRQEQFSAH HCQVNEVIGG MEELLGKSLT TQIKLKTEVN KDIADIYVDR GDLEDALLNL
VLNAKDAMGG EGDILIKTDI TYLSGLLPGI TGSPQVEEGQ YVTVSVTDSG CGIPAHLLEK
IFEPFFTTKD KSKGTGLGLS MVYGFVKRSK GYMSVMKSDE QGTEFCLWFP VTKQAIVEEI
KKDERIKVPV VASKLKVLIV DDEVELLNVL KDYCELLGME VESCNDPLEV RRRYSSGLGD
IKLLITDVLM PGGINGYELA KELSADAELS VLLISGFIGD IGINKNEDMP YRVLHKPFDL
EGLVDSLEQV GIEFTCASE
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