| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0942 |
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| Symbol | |
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| ID | 6115176 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 1250833 |
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| End bp | 1251441 |
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| Gene Length | 609 bp |
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| Protein Length | 202 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641632425 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001759330 |
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| Protein GI | 170725304 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0290973 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTGACG ATGCCACTCA AGCTAACTCC TCAAATAAAG AGGAGCATCA TCACTTCAAA
ATTTTTAAAC CCTACGGTTT TCTCAGTCAA TTTGTTCCGG AAACCAGAAA GCGTAAAAAA
CTCCTCGCAG AGTTAGCTGA CTTTCCAAAG GGAACTATGG CTATTGGCAG ACTAGATCAT
GACTCAGAAG GGCTACTCTT ACTTACCACC GACGGTATGG TCAGCCATCA GGTGCGAAGT
AAAAAAGTTG AGAAAGAGTA TTATGTTCAG CTTGATGGCG ATATCACCGC TGATGCCATT
ACTCAGCTTC AAAATGGTGT TGAAATAGGG ATCAAAGGAG ATAAGTATCT CACTCTACCT
TGCAGGGTAT TTAAGTTAGC CTCAGAGCCC AATTTGCCTG CAAATGGACG AAAAGTGAGA
GATCTTCGCC ACGGACCTAT GAGCTGGATA TCCATCACCA TAAGCGAAGG GAAAAACCGA
CAAATACGCA AGATGACCGC AGCCGCAGGG TTTCCAACCT TAAGGTTAGT CCGAGTTCGC
ATTGGTAATA TCGACATTAA TGAGATGCAA GCAGGTGATG TGCTCCCTCT CTCCTTCCCC
CTTGACTAA
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| Protein sequence | MSDDATQANS SNKEEHHHFK IFKPYGFLSQ FVPETRKRKK LLAELADFPK GTMAIGRLDH
DSEGLLLLTT DGMVSHQVRS KKVEKEYYVQ LDGDITADAI TQLQNGVEIG IKGDKYLTLP
CRVFKLASEP NLPANGRKVR DLRHGPMSWI SITISEGKNR QIRKMTAAAG FPTLRLVRVR
IGNIDINEMQ AGDVLPLSFP LD
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