Gene Swoo_0815 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_0815 
Symbol 
ID6115049 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1098845 
End bp1100437 
Gene Length1593 bp 
Protein Length530 aa 
Translation table11 
GC content44% 
IMG OID641632300 
ProductBCCT transporter 
Protein accessionYP_001759205 
Protein GI170725179 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1292] Choline-glycine betaine transporter 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.820785 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCAAAAAA AGCAGTCAAA TGCTGGGGGA CACTCAATGT CTAATATAAC CGATAGCACA 
ATGATGACGG ATAAACCTGG ATCCGTTTTA GAGAAATTAG GAGTCGATAA TCCAGCTTTT
TGGATGAGCG GTGGCTTTAT CAGCCTGTTC GTTCTCTTAG CCCTTTTTGA TAACCAACTT
CTGTCAGAGA TAGTTAACGC TGGTTTCGCC TGGTCAGTGA ACTATTTTGG CCCATTTTGG
CAAATTTTGA TGTTAATGAC CTTTGTGATT GCCATTGCAT TGGCCTCTGC GAAAACGGGT
AATGTTCGTT TAGGTAATCT GGATAAACCA GAAATTGATG GCTTCAAATG GATGGCGATC
ATCTTATGTA CCTTATTAGC CGGTGGTGGC GTATTTTGGG CTGCAGCCGA GCCTATTGCA
CACTTTGTTT CTCCTCCACC ACTCTATGGG GCTCAAGAGG ATAAGATGCA GGGGGCATTT
AATGCCTTGT CTCAATCTTT TATGCACTGG GGTTTTTTAG CCTGGGCGAT TTTAGGTAGC
TTAACCTCGA TTGTCTTGAT GCACCTTCAT TACGATAAGG GCTTACCGCT GCAACCTCGA
ACCTTGCTTT ACCCCATTTT AGGTGAGCGG GCATTGAAAG GCGCGACAGG AGCTTTGATT
GATGCATGTT GTATCATTGC TGTGGCAGCT GGAACTATTG GCCCTATTGG ATTTTTAGGC
TTGCAGCTTA GTTTCGCGCT AAATGCCCTT TTTGGTATTC CCGATGGCTT TACCACACAA
CTTATTATTG TGATGTTGGC GATCGTTATC TATACCATCT CTGCCTTGAG TGGAGTCAAC
CGCGGGATCC AGATCCTTAG CCGTTATAAC GTCATTTTAG CGGTTGGTTT GATTATCTAT
ATTCTACTAT TTGGTCCAAC AAATTTTATC GTCAATAGCT ACCTGCAAGG GGTTGGGACT
ATGATCGATA ACTTTATCCC TATGGCGACC TATCGAGGTG ATGAGGGCTG GTTAAGCTGG
TGGACAGTAT TCTTCTGGGG CTGGTTTATT GGTTATGGTC CTATGATGGC GATCTTTCTT
GCCAAGATCT CTCGAGGTTA CACCATTAGA AAGGTCGTTT TCTCAATCTG TATTATCGCA
CCACTGATCA CCTGCTTCTG GTTTACTGTG GTTGGCGGCT CTGGCCTAGC ATTTGAGATA
GCCAATCCTG GTTCTGTCAG TAAGGCATTT GAAGGTTTTA ATCTACCTGG TGCTTTATTA
GCGGTCACTA ATCAATTACC TTTCCCTATG GTGATCTCGA TTCTATTCTT AATTCTGACC
ACCATTTTTA TTGTCACAAC CGGTGACTCA ATGACTTACA CCATTAGTGT TGTGATCAGT
GGTTCAACAG AACCAAACGC TGTGATTAGG ATTTTTTGGG GAATTATGAT GGGTATTACC
GCCATTATAT TGATCTCACT AGGCTCTGGA GGGGTGACGG CATTGCAATC CTTTATCGTT
ATTACCGCGG TTCCTGTGTC GTTGATCCTC TTACCTTCCC TATGGAATGG GCCACAAATC
GCCATGAAGA TGGCAAAGGC TCAAGGTCTA TAA
 
Protein sequence
MQKKQSNAGG HSMSNITDST MMTDKPGSVL EKLGVDNPAF WMSGGFISLF VLLALFDNQL 
LSEIVNAGFA WSVNYFGPFW QILMLMTFVI AIALASAKTG NVRLGNLDKP EIDGFKWMAI
ILCTLLAGGG VFWAAAEPIA HFVSPPPLYG AQEDKMQGAF NALSQSFMHW GFLAWAILGS
LTSIVLMHLH YDKGLPLQPR TLLYPILGER ALKGATGALI DACCIIAVAA GTIGPIGFLG
LQLSFALNAL FGIPDGFTTQ LIIVMLAIVI YTISALSGVN RGIQILSRYN VILAVGLIIY
ILLFGPTNFI VNSYLQGVGT MIDNFIPMAT YRGDEGWLSW WTVFFWGWFI GYGPMMAIFL
AKISRGYTIR KVVFSICIIA PLITCFWFTV VGGSGLAFEI ANPGSVSKAF EGFNLPGALL
AVTNQLPFPM VISILFLILT TIFIVTTGDS MTYTISVVIS GSTEPNAVIR IFWGIMMGIT
AIILISLGSG GVTALQSFIV ITAVPVSLIL LPSLWNGPQI AMKMAKAQGL