Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0317 |
Symbol | |
ID | 6114543 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 392174 |
End bp | 393028 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641631801 |
Product | regulatory protein AmpE |
Protein accession | YP_001758713 |
Protein GI | 170724687 |
COG category | [V] Defense mechanisms |
COG ID | [COG3725] Membrane protein required for beta-lactamase induction |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.810004 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGGCAC TGTTCTCCTT GTTAGTGGCA ATCTTAGTTG AGCGATTGAA GTTTCTGCCT CAATCTTGGC AACTCGATTC GATTCTTAAT CTCTATTCAA AGACGCTGTT TGGCAATAAG CAGTTAAGCT CTGATGTTAT GATGGCCTTG GCACTGATTC TGCCTGCTAT CGCCGTTCAA GTTGCCATGT GGGCGGTTAA TGGGATCTTC TGGGGATTAG TGAGTCTTAC CTTGTGGGTG GCGATCTCAA TTTTGTGCTT TAGTCACTTA AAGCAGAGAC AGCTGTTTAA GCGTTACATG CAAGCTGCTT GCAGAGGCGA TTCTCAAGCT TGTTACCATT TTGCCGATGC GCTCGATCCT AACGTCTCAT TAGATGCTGT TTCTGAGGAG GAGTTAGGGG CTAAAGTTGG GCAAAGTGCG GCTTGGCTAA ACTACCGCTT TTATGGTGCT GTTGCGCTGT TTCTTATCAT ACTTGGCCCA GCAGGAGCGG TTTTCTATTG CACGGTTCGT TATTTTTCTG ACCAGAACCA AGAGGAGAAG CTTGAGCTTC CTTTAGTGGA AGATGTGTTA ATGGTACTTG ATTGGTTACC TAGCCGCATT TTTGCTTTTG GATATGTCCT CAGTGGTCAG TTTTCCCAAG CCTTCGCTTG TTGGATGCAA TACGCGTTAA ATATCCGCAG TAGTGCTAGG GAGGTCGTTA CTCAGGTTGC ACAGGCCGCT GAGCCGCAGC CAGAGACTTC TGCAACACCT ATCTGTACAC AGTCAACTTT AAGCCTACTG CAACTGAGTA AGCGAAATTT TATTCTTTTA CTTGTTTGCT TGTCCATGTT GACCATCTTT GGTGTCGTGG CTTAA
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Protein sequence | MMALFSLLVA ILVERLKFLP QSWQLDSILN LYSKTLFGNK QLSSDVMMAL ALILPAIAVQ VAMWAVNGIF WGLVSLTLWV AISILCFSHL KQRQLFKRYM QAACRGDSQA CYHFADALDP NVSLDAVSEE ELGAKVGQSA AWLNYRFYGA VALFLIILGP AGAVFYCTVR YFSDQNQEEK LELPLVEDVL MVLDWLPSRI FAFGYVLSGQ FSQAFACWMQ YALNIRSSAR EVVTQVAQAA EPQPETSATP ICTQSTLSLL QLSKRNFILL LVCLSMLTIF GVVA
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