| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0310 |
|---|
| Symbol | |
|---|
| ID | 6114536 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 382812 |
|---|
| End bp | 384551 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 641631794 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001758706 |
|---|
| Protein GI | 170724680 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGATC TAGCCCCAAA TCCAATTGTT CTTTCGGAGG ATAGTTCCTC CATCCCTGAA
CACCAGCGAA GCGTGATTGG ACGTTTAGGG AACACTATCG AATTAGCTCA CAATGAATCC
TATCTAAAAA CAGTAAAAGT ACTAGATACT GATGGTATGG TCTTCACTCT AAACCCATCG
TTATTTTTGA CTGGCGATGA GGAAATAGAT CGGGTAATGC GCCCTTTCAT GATTGCTTCA
ATTCAGCAAT ACATGCCAAA AACCCTAAGT GTAATCGAAA AACAAATATC CGTATTTACA
TCTACCTATA GAAATGAACA AGATATAAAT AAAGCCATTC AAGATACCGT TTTAGTAGCT
CATGAAAAAG GTGATGATAA TATATCCTCA CTTCGAAGAC TATTGAAGTG GTTTATAGCA
TATGAAGTTG AAGGTCTGGA TCTTGACCTT TGTGAGAAGA TTCACTCATT AGTATTTGGC
GGCAATAAAA ATAGTTATCT AGCGCTTTAT AGCTTAGACG CTGAAAATGG TCCATTTATA
AGAGAGGAAT TGAGAATTCT TCAGGCAGCA GCGTTAAACC CTAACATCCA TATTGAGAAT
AGAGTTGTAT TGAAACTATG CCTAGAATTT GGCCTACGAC CGATTCAAAT AGCACTCTTA
AAGCAATCAG ACTTCATTGT TGACGAAGAG CTAGAGCTGG CATATTTAAA AATTCCAAGA
GTAAAACAGA AAAATCGATA TAGACGCACT CACTTCACAA AACGCTTGGT CAGTTCGGAA
CTTGCTGAAC TGTTATCAAC TTTAATTGCT ATTCATCGAA CTGTTTACAA AGAACTTGAG
ATTGAAGATG CACCTCTAAT CATGAGGAGA CATATCTTTT TTAGAGTAGG TAATTTAGCT
AACCCTTACT TAGTAACTGA CGAAGTAACT GACGAAGTAA CTGACGAAGT AACTGACGAA
GTAACTGACG AAGTAACTGA CGAAGTAACT GACGAAGTAA CTGACGAAGT AACTGACAAC
GATAAGCGAA TAGTAAATAA AAACCCTTAT TTTGAAGATT TCCAAAAATG TAATTGGGAA
GACATTACTC ATCATATTTC GAGTAGTCAG ATAGATTACC GCTTAGACCT TATTTCAAAA
TTACTACCAA ACAGCCCTCG AACTGGCTTA CCGTTTCAAA TGAACGCTTA CCGTTTCAGG
TACACGCTTG GAACAAATGC CGTTACGCAA GGCATGACTG AAATAGAAGT AGCAGAACTG
CTTGACCATT CAGCGTCTGG TAGCGTAAAG CATTACTTTC ACTACACTCA TGAAATGTTT
GAAATTTTGG AAGATGCGAC TCTAGATCGA GTAGAAAATA AGTTTTTCAC TGCGGCATGG
CGCAAACAAG AGTTAGTCGG AAATATCTAT GGAGAAGATG TTGTATCACC AAGCACAGCG
ATCTCCATCG GAAAATGTCA AAAAAATGCA CCTTGCGTAC TAGAGCCAGC AGTGGCCTGT
TATCAATGTG ATAAATTTTG CCCGAATAAA AATGCTGAAG GTCATCACCA GCAGCTTAAA
AGTCTACAAA GTCGAGCTAA AAAGGCTAAA TTGGTGTCAA ACAGGGAGGT AGCTCACCAG
TTCGATGAAG CTATAGCAGG CTGCGAAGCG GCAATACAGT ATGCTGAAGG ACTGGACGTT
ATAGCAATTC AGTATGAATC TGCCAACGAT GTAGGGAAGC TCAATGTCAA AGCTGATTAA
|
|---|
| Protein sequence | MKDLAPNPIV LSEDSSSIPE HQRSVIGRLG NTIELAHNES YLKTVKVLDT DGMVFTLNPS
LFLTGDEEID RVMRPFMIAS IQQYMPKTLS VIEKQISVFT STYRNEQDIN KAIQDTVLVA
HEKGDDNISS LRRLLKWFIA YEVEGLDLDL CEKIHSLVFG GNKNSYLALY SLDAENGPFI
REELRILQAA ALNPNIHIEN RVVLKLCLEF GLRPIQIALL KQSDFIVDEE LELAYLKIPR
VKQKNRYRRT HFTKRLVSSE LAELLSTLIA IHRTVYKELE IEDAPLIMRR HIFFRVGNLA
NPYLVTDEVT DEVTDEVTDE VTDEVTDEVT DEVTDEVTDN DKRIVNKNPY FEDFQKCNWE
DITHHISSSQ IDYRLDLISK LLPNSPRTGL PFQMNAYRFR YTLGTNAVTQ GMTEIEVAEL
LDHSASGSVK HYFHYTHEMF EILEDATLDR VENKFFTAAW RKQELVGNIY GEDVVSPSTA
ISIGKCQKNA PCVLEPAVAC YQCDKFCPNK NAEGHHQQLK SLQSRAKKAK LVSNREVAHQ
FDEAIAGCEA AIQYAEGLDV IAIQYESAND VGKLNVKAD
|
|---|
| |