| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5379 |
|---|
| Symbol | |
|---|
| ID | 5195731 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009507 |
|---|
| Strand | + |
|---|
| Start bp | 284271 |
|---|
| End bp | 286133 |
|---|
| Gene Length | 1863 bp |
|---|
| Protein Length | 620 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640579306 |
|---|
| Product | conjugal transfer mating pair stabilization protein TraN |
|---|
| Protein accession | YP_001260254 |
|---|
| Protein GI | 148550815 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.829255 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTCG CGCTCGCAAT CAGTCTCGCG GTCCTGGCCG GGGCCAGCTT CCCCGCGCAG
GCGCAGACCA CGCTGGAGGA AGCGCGCGAG CAGGGAAAGG CGATGGGAGC CGCGGCCAAG
GCCAATCCGG TCCTGGTGCC CAGCGACAAC GCGCAGGCGG AAGCCGTGCC GGGGTTCTCT
GGGACGACCC TCCCGCAGGG CAGCTATTTC GATGATCCGG ACAAGCTGAT CAACGATGCA
CAAGCGCTCA AGTCGAGCAG CGAGCAGTAC CAGATCACGA CCGACAGCAG CCATGTGCGC
CCGACCTTCA GCAATGCCGA GATCCTCTCG ACGACTAATC GAGCGACCAC CATTGAGGAG
GATCCCTCCA CCTATCTGGC GGGCGAGGCT TACGGCGGGA CGAGCGGAAG CTGCACCGCG
CTTCCGCCTG GATCGGGCAC GAGCGGCTAT TATGAGGCGA GTTGCAACGC GGGCGCCAAG
GTAACGACCA ACGCCCGCAG TTGCACCGTC AACCTGGATG TGCGCACCGA GAAGCGCACG
ATCTACACTT ATTATGCGGG ACGTTTGAGT TTCCTGCCGA GCGATGGCGG CCCCTATCCG
GCCCGTGCCG CGTTCGACGA TGAAATCGCT TCGGGAGTCT GCTGGGAAAG CCGACCCATC
GACTATTGCG ACAATATGGC TGCCTATGGC TATACGGCGG CCGACACCTG CAAGAGCCTG
GGTCACACGG CCGTCGAGGT GAAGTGCAGC GCTGAAGCGC AAGGGATTAC GCAAGGCGCC
TATCACCCCG GCACGGTGAT TTCGACCGGC AACTACTGGC TGACCAGGCA GGAGGAACCG
GCGGTTCCCG TCATCACCCG CAACGAGGGT TTCTGCGCGG CCTATACCGG CGACAGCAAC
TGCACGCTGG AATCGGAGAT CTGCACGGCA AGCGATCCGG TTACCCGGAT CGTCGATGGC
GTGCCTGTCA CGCAGCCGTG CTGGGCGTGG CAGCGCAGCT ACCAGTGCCA CACCATTTCG
TCGGCCAACG ACTGCTCGGA ACTCGAAGCC AATGGCAGTT GCACCTATCA GCGCACCGAA
TGCCTGGACG AGGATCCTGA CGGCGGACCC TGCAAGGTCC AGGAGAAGAT CTATCGCTGC
CCGACGCCGT CGGGCACCTC GGCCGACGCC CCGCAATATA TCTGCGGCAA CGACGTCTAT
TGCATCAACG GCGACTGCGA GCCGATCGAA CGGCAGGCTT CGACCGAATT CAAGGACGCG
CTGGTGGCGC TGCACTCGAT CGACCAGGCC GGCAAGGAGT TCGACGAAAC CAATTACCGG
GTGTTTTCGG GCACACGCGA GACCTGCCAT AAGCCGGTAT TTGGCCTCAT CAACTGCTGT
GCCGGCAAGG TTTCGGGATT GGTGCCGGTA GCGGCGGGGG CGGCCGCTCT GGCGGGCGGG
CCGGCTGCGA TCGCGGCCTT CGCCACGCCG TTCCTCGTGT TGTTCGCCTG TTCTCAGGAC
GAGATGAGGC TCGATATCAA GGACCGGATG GGCTTTTGCC ACAAACTGGG CACCTACTGC
TCATCGAGTT TCCTGGGCAT CTGCAAGACC AAGCGCACGG CCTATTGCTG CTTTGAAAGC
AAGCTTTCGC GGATCCTGCA GGAGCAGGGC CGGGTGCAGT TGGGAAAGCC CTGGGGGGCG
CCCAAGAAGG AGCAGTGCCA GGGTTTCACG ATCGAGGAAT TCGCCTCGCT CGACCTTTCG
GTGATGGATT TCACCGAAAT CTATTCGGAC TTCCTGGATG CAGCAAAGCT TCCCGACGAA
GTCCAGACGA TGACGGACAT TCAGTCGAAG ATACAGGATT ACTATGATCT CCACGGCAAA
TGA
|
|---|
| Protein sequence | MRLALAISLA VLAGASFPAQ AQTTLEEARE QGKAMGAAAK ANPVLVPSDN AQAEAVPGFS
GTTLPQGSYF DDPDKLINDA QALKSSSEQY QITTDSSHVR PTFSNAEILS TTNRATTIEE
DPSTYLAGEA YGGTSGSCTA LPPGSGTSGY YEASCNAGAK VTTNARSCTV NLDVRTEKRT
IYTYYAGRLS FLPSDGGPYP ARAAFDDEIA SGVCWESRPI DYCDNMAAYG YTAADTCKSL
GHTAVEVKCS AEAQGITQGA YHPGTVISTG NYWLTRQEEP AVPVITRNEG FCAAYTGDSN
CTLESEICTA SDPVTRIVDG VPVTQPCWAW QRSYQCHTIS SANDCSELEA NGSCTYQRTE
CLDEDPDGGP CKVQEKIYRC PTPSGTSADA PQYICGNDVY CINGDCEPIE RQASTEFKDA
LVALHSIDQA GKEFDETNYR VFSGTRETCH KPVFGLINCC AGKVSGLVPV AAGAAALAGG
PAAIAAFATP FLVLFACSQD EMRLDIKDRM GFCHKLGTYC SSSFLGICKT KRTAYCCFES
KLSRILQEQG RVQLGKPWGA PKKEQCQGFT IEEFASLDLS VMDFTEIYSD FLDAAKLPDE
VQTMTDIQSK IQDYYDLHGK
|
|---|
| |