| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4782 |
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| Symbol | |
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| ID | 5196725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 5261192 |
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| End bp | 5263099 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640584339 |
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| Product | peptidase M61 domain-containing protein |
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| Protein accession | YP_001265257 |
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| Protein GI | 148557675 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.300179 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGGCA AGGTTGCGGC GGCGTGTGCC GCGCTTCTCG TTCTGGCGCC GCATGCGGCG
CAGGCGCAGG GCATGGGATC GCCACAGGCC GGCGCGGCAT TGCGCGATGC CGACTATCCG
GGCGTCATCC GGCTGACGAT CGACGCGCGC GACGTCTCGC GCGCGATCCT GCGCGGGACG
ATGGTCCTGC CCGTCGCCGG ACCCGGGCCG ATGACGATCT ATTTCCCGCG CTGGGTGCCG
GGCCATCACG CCCCGTCGGG GCCGATCGCG CGGATCGCCG GGCTGACGCT GCGCGCCGGT
GGGGCCGAGA TCGGCTGGAA GCGCGATCCG GTGATGATGC ACGCGATCCA TGTCGACGTG
CCGGAAGGCG CGGATACGAT CGAGCTCGGC TTCCAATATC TCTCCCCCAC CGATCCGAAG
ATGGGCCGGA TCGAGGTGAG CCCGGAGATG ATCGACCTGC AATGGACGTC GCTGGCGCCC
TATCCGGCGG GCTATCCCTC GCGGCGGATG ACGGTGCAGG CATCGGTGCG CCTGCCCGAC
GGCTGGCAGT TCGCCACCGC GCTCACGACC GACGGCGTCG CCGACGGCGT GATCCGCTTC
AAGCCGGTCG ACTATGAGAC GCTGGTCGAC TCCCCGATCC TCGCCGGCCG CTATGCGGCG
CGCTACAAGC TCGACGAATC GAATGCTCCG GTCGGACTGG CGGTCTTCGC CGATCGGCCC
GAGCTGCTCG CCGCCGCCCC CGCGCAGATC GAGGCGCATC GCCGGCTGGT CGACCAGAGC
CTCAAGCTGT TCGGATCGCG CCATTACGAC CATTATGATT TCCTGCTCGG CCTGACCGGG
AGGATCGGCA GCCTCGGCGC CGAGCACAGC CGGTCGAGCG AGAATTTCAC GGTGCCCGAC
TATTTCACCG ACTGGGCCGG CACCGCGCCG AGCCGGGAGC TGCTGCCGCA CGAATTCGTC
CATAGCTGGA ACGGCAAGTT CCGCCGCGGC GCGGACCTGC TGACGCCCAC GCTCGACACG
CCGATGCAGA ACAGCCTGCT GTGGGTCTAT GAAGGATTGA CGCGCTATCT CGGCGCCGTG
CTGTCGGTCC GCTCGGGGCT GCACAGCGTG CAGGAAGGGC TCGACAATGT CGCATTGAGC
GCCGCGACGA TGCAGAACCG GACCGGCCGG CAATGGCGTC CGCTGATCGA CACCACCAAT
CATTCGATCT ACGCCGAAGG CGCGCAGCCC TGGCCCAACT GGCAGCGCGG GTCCGACTAT
TATCTGGAGG GGCAGCTGAT CTGGCTCGAC GTCGACACGC GCATCCGCGC GCTGTCGGGC
GGCAAGCGCA GCCTCGACGA TTTCGTCCGC GCCTTCTTCT CGATCGACGA CGGCTCCTAT
CGGCCGGTCC CCTATGTGTT CGACGACGTC GTCGCCGGAT TGAACGCCGT CGCGCCGTGG
GACTGGGCCC GCTATTTCCA CGACCGCGTC GACAAGGTCG CGCCGGACGC GCCGCTCGAC
GGGCTGGCGC GCGGCGGCTA CCGCCTGGTC TATGGCGACA CGCCGACCGG CTTCTTCCGC
AGCGGAGAGG CGCAGCGCGG CGTCACCGAC CTGAGCTGGT CGATCGGGCT GACGGCGGAC
AAGGGCGGCA CCATCACCGA CGTGGTGTGG GACGGCCCCG CCTTCGCCGC CGAACTGACG
ATCGGCACCC AGATCCTCGC GGTCGACGGC CGGAGCTATG ACTCCGGCCG CCTCGTCCAG
GCCGTCGCAG CCTGCAAGGG ACGCGCCGAC CCGCTGACGC TGACGGTCAG GCGCGCCGAC
GCGGTGCGCG ACGTCAGGGT CGCCTGCACC ATGGGGCTGC GCTATCCGCG GCTGGAACGC
GATTCGTCGG CGCCCGCGCG GCTCGACGCC ATCTTCGCCC CGCGATGA
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| Protein sequence | MIGKVAAACA ALLVLAPHAA QAQGMGSPQA GAALRDADYP GVIRLTIDAR DVSRAILRGT
MVLPVAGPGP MTIYFPRWVP GHHAPSGPIA RIAGLTLRAG GAEIGWKRDP VMMHAIHVDV
PEGADTIELG FQYLSPTDPK MGRIEVSPEM IDLQWTSLAP YPAGYPSRRM TVQASVRLPD
GWQFATALTT DGVADGVIRF KPVDYETLVD SPILAGRYAA RYKLDESNAP VGLAVFADRP
ELLAAAPAQI EAHRRLVDQS LKLFGSRHYD HYDFLLGLTG RIGSLGAEHS RSSENFTVPD
YFTDWAGTAP SRELLPHEFV HSWNGKFRRG ADLLTPTLDT PMQNSLLWVY EGLTRYLGAV
LSVRSGLHSV QEGLDNVALS AATMQNRTGR QWRPLIDTTN HSIYAEGAQP WPNWQRGSDY
YLEGQLIWLD VDTRIRALSG GKRSLDDFVR AFFSIDDGSY RPVPYVFDDV VAGLNAVAPW
DWARYFHDRV DKVAPDAPLD GLARGGYRLV YGDTPTGFFR SGEAQRGVTD LSWSIGLTAD
KGGTITDVVW DGPAFAAELT IGTQILAVDG RSYDSGRLVQ AVAACKGRAD PLTLTVRRAD
AVRDVRVACT MGLRYPRLER DSSAPARLDA IFAPR
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