| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4341 |
|---|
| Symbol | |
|---|
| ID | 5198585 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 4785535 |
|---|
| End bp | 4787589 |
|---|
| Gene Length | 2055 bp |
|---|
| Protein Length | 684 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640583895 |
|---|
| Product | carbon starvation protein CstA |
|---|
| Protein accession | YP_001264819 |
|---|
| Protein GI | 148557237 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1966] Carbon starvation protein, predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.278499 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.165929 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCGT CGCGCAGCAT CGCCCGCCAC CTCCCCTGGA TCGGAGTGGC CGGCGTCGGA
GCGCTCGCCG CCGGCGGCAT GGCGATCCAG CGCGGCGAGC AGGTCAACGC GCTGTGGCTC
GTCGTCGCGG CGCTGTCGGT CTATCTGATC GCCTATCGCT ACTACAGCCT CTATCTGGCG
CGCAGCGTCG TCGGGCTCGA TCCGGCGCGG GCGACGCCGG CCGTCCGCCA TGCCGACGGG
CTCGATTTCG TGCCGACCGA TCGGACCGTG CTGTTCGGCC ACCACTTCGC CGCGATCGCC
GGGGCGGGCC CGCTGGTCGG TCCCGTCCTC GCCGCGCAGA TGGGCTATCT GCCGGGGATG
CTGTGGCTGC TGGCGGGCGT CGTCCTCGCG GGCGCGGTGC AGGATTTCCT GGTGCTGTTC
ATATCGATGC GCCGCGACGG CCGCTCGTTC GGCGAGCTGA TCCGGCTGGA GATGGGGCCG
CTCGCGGGCA CGATCGCGCT GGTCGGCGCC TTCATGATCA TGGTCATCAT CCTCGCGGTG
CTGGCGCTGA TCGTCGTACG CGCGCTCGCC GACAGCCCCT GGGGCATGTT CACCGTCGCC
GCGACGGTGC CGCTCGCGAT CCTGATGGGC GTCTATACCC GCTGGCTTCG GCCGGGGCGG
ATCGGCGAGG TGTCGGTGCT GGGCCTGGTC GGGCTGATCC TCGCCATCGT CTACGGCCAG
ACGATCGCGG AGAACCCCGC GACCGCCGCC CTGTTCACCT TCTCGGCGGT GCAGCTTTGC
TGGATATTGA TCGGCTATGG CGCGGTCGCT GCGATGCTGC CGGTGTGGCT GCTGCTCGCG
CCGCGCGACT ATCTGTCGAC CTTCCTCAAG ATCGGCGCGA TCGTCGCCCT CGCGATCGGC
ATCGCGATCA TGCAGCCCGA ATTGCGCATG CCCGCGCTCA CCCGCTTCGT CGACGGATCG
GGCCCGGTCT GGTCGGGGGC GCTCTTCCCC TTCCTGTTCA TCACCATCGC CTGCGGCGCC
GTCTCCGGCT TCCATGCGCT GATCGCCAGC GGCACGACGC CGAAGCTGAT CGCGTCGGAG
GGCGATGCGC GCATCATCGG CTATGGCGCG ATGCTGGCCG AGAGCTTCGT CGCGATCATG
GCGCTGGTCG CCGCCTCGAT CCTCGATCCC GGCGTCTATT TCACGATGAA CGCGCCCACC
GCCCTGCTCG GCACGACGCC GGACAGCGCC GCGGCGGCGG TGACGGCCAT GGGCTTCCCG
ATCGACGCCG CGACCATCGC CCAGACCGCG CGCGACGTCG GCGAGCATAG CATCATCTCC
CGCGCGGGCG GCGCGCCGAC CCTCGCCGTC GCGATGGCGC AGATCTTCAG CCATGTCGTC
GGCGGCAAGG CGATGATGGC CTTCTGGTAT CACTTCGCGA TCCTGTTCGA GGCGCTGTTC
ATCCTGACCG CCGTCGACGC CGGCACCCGC GCCGGCCGCT TCATGCTGCA GGACCTGCTC
GGCCTCGTCT CGCCGCGCCT CAAGGATACC CAGTCGCTCG CCGCCAATGC GCTCGCGACG
GCCCTCTGCG TCGCGGCCTG GGGCTTCTTC CTCTACCAGG GCGTCACCGA TCCGCTCGGC
GGCGTGAACA CGCTGTGGCC GCTGTTCGGC ATCTCGAACC AGATGCTCGC CGCGGTCGCG
CTGATGCTCG GCACGGTCGT GCTGTTCCGG ATGAAGCGCC AGAGGATGGC CTGGGTGGCG
ATGGCGCCCG CCGCCTGGCT GGTGCTCTGC ACCGGCACCG CCGGGCTGCT CAAGATCTTC
TCGGCCGATC CGCGCGTCGG CTTCCTCGCC CATGCCGCGA AGTTCCGCGC CGCCGCCGCC
GATGGCACGG TGCTCGCCCC GGCCAAGTCG ATGGCCGACA TGCAGCGGAT CATCTTCAAC
GACATGGTCG ACGCGGCGCT GTGCCTGCTG TTCCTGCTGG TCGTCGTCAG CATCCTGCTG
CTGGCGATCC GCGCCTGCCT CGACGCGCTG CGCCGCGACG CGCCGAGCGC GCACGAGACG
GCGGTGGCGG CATGA
|
|---|
| Protein sequence | MTSSRSIARH LPWIGVAGVG ALAAGGMAIQ RGEQVNALWL VVAALSVYLI AYRYYSLYLA
RSVVGLDPAR ATPAVRHADG LDFVPTDRTV LFGHHFAAIA GAGPLVGPVL AAQMGYLPGM
LWLLAGVVLA GAVQDFLVLF ISMRRDGRSF GELIRLEMGP LAGTIALVGA FMIMVIILAV
LALIVVRALA DSPWGMFTVA ATVPLAILMG VYTRWLRPGR IGEVSVLGLV GLILAIVYGQ
TIAENPATAA LFTFSAVQLC WILIGYGAVA AMLPVWLLLA PRDYLSTFLK IGAIVALAIG
IAIMQPELRM PALTRFVDGS GPVWSGALFP FLFITIACGA VSGFHALIAS GTTPKLIASE
GDARIIGYGA MLAESFVAIM ALVAASILDP GVYFTMNAPT ALLGTTPDSA AAAVTAMGFP
IDAATIAQTA RDVGEHSIIS RAGGAPTLAV AMAQIFSHVV GGKAMMAFWY HFAILFEALF
ILTAVDAGTR AGRFMLQDLL GLVSPRLKDT QSLAANALAT ALCVAAWGFF LYQGVTDPLG
GVNTLWPLFG ISNQMLAAVA LMLGTVVLFR MKRQRMAWVA MAPAAWLVLC TGTAGLLKIF
SADPRVGFLA HAAKFRAAAA DGTVLAPAKS MADMQRIIFN DMVDAALCLL FLLVVVSILL
LAIRACLDAL RRDAPSAHET AVAA
|
|---|
| |