| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4335 |
|---|
| Symbol | |
|---|
| ID | 5197801 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4781131 |
|---|
| End bp | 4781883 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640583889 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001264813 |
|---|
| Protein GI | 148557231 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.84851 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGGT TCGAGGACAA GGTCGTCGTC ATCACCGGTG GGCTGGGCGG CATCGGGCTG
GAGGCATGCG AGCGCTTCGC GGCGGGCGGC GCCCGGGTCG TCGCGGTCGA CCGCCGCAGG
GATGCGGGCG GCCGGATCGC GCAGGGCTTC CGCGAACGCG GGCTCGACGT GCGCTGCCGC
GTCGCCGACG TCACCAGCGC GGTGCAGGTC GCGACCCTCG GCCAGCATGT CCGGTCGGCC
TATGGCCGCG CGGACATCCT GGTCAACAAT GCCGGGATGC TGAGCTTCGC CCCGATCGTC
GGCGCCGATG CCAATGAATG GGATCGCGTC CAGAAGGTGA ATTGCAAGTC CGCCTTCCTG
ATGATCCGGA CCTTCGCGCC GCTGATGGCG GGGAAGGGGG CGATCATCAA CATCTCCTCC
TCGGCCGGGC TGAAGCCGAC CGCGAACACC GCCGCTTATT CGATCGCCAA GGCGGGGCTG
CTGATGCTGA CCCAGATCGC GGCGATGGAA CTGGGGCCGG GCATCAGGGT CAACGCGATC
GCCCCAGGCC CGCTCGATAC CGACATGCCC CACAGCTATC TGAAGGGGCA TCCGCACAAG
GGCCAGATCA TGGAGCACAT GATCGAGCGG ACGATCGTCA AGCGGCTCGG CCAGCCGGGC
GAGATCGCCG AGGTCGTCGC CTTCCTGGCG AGCGACGCGG CCTCCTACAT CAACGGCGCG
ACCATCACGG CGGACGGCGG CTTCATGAGC TGA
|
|---|
| Protein sequence | MTRFEDKVVV ITGGLGGIGL EACERFAAGG ARVVAVDRRR DAGGRIAQGF RERGLDVRCR
VADVTSAVQV ATLGQHVRSA YGRADILVNN AGMLSFAPIV GADANEWDRV QKVNCKSAFL
MIRTFAPLMA GKGAIINISS SAGLKPTANT AAYSIAKAGL LMLTQIAAME LGPGIRVNAI
APGPLDTDMP HSYLKGHPHK GQIMEHMIER TIVKRLGQPG EIAEVVAFLA SDAASYINGA
TITADGGFMS
|
|---|
| |