| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4302 |
|---|
| Symbol | |
|---|
| ID | 5198970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4743824 |
|---|
| End bp | 4746052 |
|---|
| Gene Length | 2229 bp |
|---|
| Protein Length | 742 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640583856 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001264780 |
|---|
| Protein GI | 148557198 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACGG GCCCGTACAG GATCACCAAG GGTGTCGCGC TTCTCCTCGC CGGCACCATG
CTCGCATCGC CGCTGCTCGC CGAGGAAGCC GCGCCGGCCG AAGAGATCGT CGTCACCGCG
CTGAAGCGCG GCAATGTGCA GCTCCAGGAC GTCCCGACCT CGATCGCGGT GGTCGGCCAG
CAGCAGCTCG AAGCGCGCGG CGTCGCCGAG TTCGCCGATT TCGCGCGCAG CGTCGCCGGC
CTGAACTTCG TCGACAGCGG CGCGGGCGAC AAGCGCTACA TCATCCGCGG CATCAACGCG
GCGGGCGAGG CGCAGACCGC GCTCTATTAC GACAATATCC CGATGACCGG CATCGGCGGC
GCGGCCACCA GCTTCGGCGA CCGCCAGCCC GACCTGCAGC TCTACGACGT CCAGCAGATC
GAGGTGCTGC GCGGCCCGCA GGGCACGCTC TACGGCTCCA ACTCGCAGGC CGGCGTCATC
CGCTTCGTCA CAAACAAGGC GCGCGTCGAC CGGTTCGAGG GTTCGGCCCA GGGCGAGCTG
TCGACCACCA GGGACGGCGG CACCAACTAC GGCATCCGCG GCATGGTCAA CGTGCCGATC
GTGCAGGACG TGCTCGCGAT CCGCGCCGTC GGCTATTCGG AGGATTATTC GGGCTGGGTC
GACAATGTCT ATCGCAACGA GAAGGACTTC AACGACACCA AGCGCGACGG CGCGCGCGTC
AGCGTGACCT TCAAGCCCGA CGAGCAGACC AACATCGTCG GCCAGTATTT CTACCAGAAC
CTGCGCACCG GCGGCCGCGC CTATACGCGC CCCTATGACG TGACGATCGG CGACAATTTC
TTCCCGGCGA TCGGCCGTCG CGCCACCTCG CAGATCGGCC GCGAGACCCG CAGCGACAAG
ATCAACATCT TCGCGCTGAC CGCCGATCGC GACCTCGACT GGTCGACCGT CACGATCGCC
GGCTCCTATT TCAAGCGCGA CGTTCTCGAC TATGTCGATA ACGGCCCATC CTTCCGCTAC
TTCGAATATC TGCAGCGGAT CGGCGAGTTT CCGCCGGTGA CGGTGCCGAT CGGCAGCCTG
TCCTACTCGC CACAGAAGTC GAAGATGTGG ACGATCGAAG CCCGCATGGC GACCAAGTTC
GACGGTCCGC TGAACGGCGT CGGCGGCATC TTCTACTCGA ACCGCGACAA CGACTTCGAG
ACCAACACCA CCGTCGTCGA TCCGATCTCG GGCCGCCCGG ACTTCTCGCA GCCGCTGATC
TCGCGCCGCA ACTTCTTCGA CAAGACGAAG GACTTCGCGG TGTTCGGCGA GCTGACCTAC
GACATCACCG AGCAGCTCTC GGTCACCGGC GGCGCCCGCT GGTTCCGCAC CAAGCGCGAC
CTGGTCGCCA ACACGATCGT GCCCTTCTTC GGGCTCGGCG CGCCGGGCAC CACCTCCGCC
AAGGCGAAGA ACGAGGACGT GATCTTCAAG GGCCTCGTCT CGTACAAGGT CACGTCGGAC
GTGCTGCTCT ACGCGCAATA TGCCGAGGGC TATCGCTCGG GCGGCACCAA CGCCTCGTCC
TTCTCGGGCG TGCCGCCGCA GTACGACCCC GACACCACGG CGAACTATGA GATCGGCGCC
AAGACGAGCT GGGCCGGCGG CGACGTCGTG TTCAACGTCG CGGCCTACCG CATCGACCTG
AAGGGGCTCC AGAGCGAGCA GCGCTTCGGT CCGGGCGGCG CCTTCTCGGG CGTCGGCAAC
ATCCCCGGCA CCGCCGCCCG CTCGAAGGGC GTCGAGGCCG ACCTGCTCGT CAAGCCCGCG
CCGGGCCTGA CCGTGCAGTT CGCCGGCAAC TACACCGACG CCAAGCTGGC GAAGGACGTG
CCGTCGCTGG GGGCCGCCGC GCTCAAGGGC AGCAACCTCG CCTATGTGCC GAAGTATAAT
CTCAGCCTCT CGGCGGATCA GGCCTTCGCG ATCAGCGACA AGGTGGACGC GAGCGTCGGC
TTCTCGGCCA GCCGCACCGG CAAGATCGAG ACGACCTATT ACACCGAGTT CAACCAGCCC
TCGCGCGGCT ACACGCTGGT CGATACCCGC GCGCGGATCA GCTGGGACCA GTTCAAGCTG
GACCTGTTCA TCAACAACCT GTTCGACAAG GCGGCCGAAC TGACCGTGTT CAACACGATC
AACGATCCGC ACGTCGTGCT GGCCAACCGT CCGCGCACGG TGGGCGCCCG CCTGGGCATC
GACTTCTAA
|
|---|
| Protein sequence | MQTGPYRITK GVALLLAGTM LASPLLAEEA APAEEIVVTA LKRGNVQLQD VPTSIAVVGQ
QQLEARGVAE FADFARSVAG LNFVDSGAGD KRYIIRGINA AGEAQTALYY DNIPMTGIGG
AATSFGDRQP DLQLYDVQQI EVLRGPQGTL YGSNSQAGVI RFVTNKARVD RFEGSAQGEL
STTRDGGTNY GIRGMVNVPI VQDVLAIRAV GYSEDYSGWV DNVYRNEKDF NDTKRDGARV
SVTFKPDEQT NIVGQYFYQN LRTGGRAYTR PYDVTIGDNF FPAIGRRATS QIGRETRSDK
INIFALTADR DLDWSTVTIA GSYFKRDVLD YVDNGPSFRY FEYLQRIGEF PPVTVPIGSL
SYSPQKSKMW TIEARMATKF DGPLNGVGGI FYSNRDNDFE TNTTVVDPIS GRPDFSQPLI
SRRNFFDKTK DFAVFGELTY DITEQLSVTG GARWFRTKRD LVANTIVPFF GLGAPGTTSA
KAKNEDVIFK GLVSYKVTSD VLLYAQYAEG YRSGGTNASS FSGVPPQYDP DTTANYEIGA
KTSWAGGDVV FNVAAYRIDL KGLQSEQRFG PGGAFSGVGN IPGTAARSKG VEADLLVKPA
PGLTVQFAGN YTDAKLAKDV PSLGAAALKG SNLAYVPKYN LSLSADQAFA ISDKVDASVG
FSASRTGKIE TTYYTEFNQP SRGYTLVDTR ARISWDQFKL DLFINNLFDK AAELTVFNTI
NDPHVVLANR PRTVGARLGI DF
|
|---|
| |