| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4199 |
|---|
| Symbol | |
|---|
| ID | 5197252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 4623449 |
|---|
| End bp | 4626016 |
|---|
| Gene Length | 2568 bp |
|---|
| Protein Length | 855 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640583753 |
|---|
| Product | regulatory protein, LuxR |
|---|
| Protein accession | YP_001264677 |
|---|
| Protein GI | 148557095 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2909] ATP-dependent transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.142655 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGCTGT GCAGGCGCGA CCTGCCGTTG CGGTCGCTGA ACGTCGCGCG ATCGGGGAAG
CTCTCCATCC TCTATGGCCC GGCGGGTTAT GGGAAGACCA CCATATTGGC GCAGTGGCGC
CAGGATCTGA TCGACCAGGG GCTGCCCGTC GCCTGGATCA CGGCCGCGCG CGAGGATGGG
GATCCGCAGG CATTCCTGAA GGTCCTCATG CTGGCGCTGC GCGATGCCGG CGTCGATCTC
GGCGAGGCGG GCTTGTGGGC CTCCGGCGAC ATCTCGGCCG CCCGTCGGCT GGAGGGCGCC
ATTCTCGCCC TCGAACGCAG CGGCAAGCCG GCTGTGATCA TCGTCGATGC CTTCGAAACG
GTCAACGAAC CGTCGATGGA CGCGATGTTC GCGGATCTGA TCGAGATGCT GCCGGATCAT
GTCCATCTGG TTCTGGCATC CCGCCAAAGG CCGCGGCTGA CGCTATCCAC GCATCTGGCG
CGCGGCAATG TCCGCCTGAT CGGTCCCGAC GAGCTGCGGT TCAACGAAAA TGAAATGGCG
CAGATGCTCG GCGCCACGGT GACGGCGTCC GATCTTGCCG CCCTTTCGGA ACGCACCGGA
GGCTGGCCCA TCGCGGTGCA GCTCCATCAG CTATGGCTCG CGAGCGCGCC GGAAGGGGCC
GAGCTGTCCT CCCGGCGGCC CATGGCGGAG CTCACGCAAT ATATGGCGGA CGAGGTGTTG
CGCACGCTCA CCGACGCGCA TCGGGACCTT CTGACCGATC TCTCGATATT CCCGGAGATC
GAGACCAACC TGGCCGATCA TGTCCGTCAG TCGGAGGACA GCGCGCTGCT GCTCGAGGAA
ATATCCGACC TGCTTCCCGG ATTGATCGAG CGGCACGGCG CCGGGATCGA AACCAGCTAT
CGCCTGCACC CGCTGATCGC CGACCATGCG GGGCGGCAGT TGAAGACAGG TCGCGGGCGC
GAAGCCCTGC TGCGCCACCG CGCGGCCCTG TGGCTGTGGA ACGACAGGCG CCACGGCGAA
GCGTTGAACC AGGCGATTCT CGGTCATGAC AATGGCTTGC TGAGGCTCTT CACGGAAACC
TTGCCCACGC TCGAGATATT CCTGGCGCAC GGCACCGACG AATTGCGCGC CGTGCTGCGG
GTCCTGCCCC CCGGATCGCT CCGCCAGTCG CCGCGGATCA GGCTCGCGGA GGCCCTGATC
CTGTCCAAGG CCGGCCTGTT CAAGGATGCC TGGAAGATCG CGGAAGCGGT GGCGGCGGAG
AGCGCAGGCG GCGATGACGA CCCGCTCCAG GAAACGGAAC GCCTGACGAT TCGGTCGATC
ATCGCCAGCC ACTTCATGAC CGCGTGCTCG GTTGCCGACA TGGCGCTCGA TCGGATCAGC
CGGATCGCCC CGACCACGCC CTTGTACTGC GCCTTCCTCG ATACCGGGCG GCTCCTGACC
TATCAGCAAA GCGGCGACCT GGAAGCGGCC CGCATGGCGC TGGCGCGAGC CAGGGCCGCC
TATGACAGCA GCGGGGACTT TCCCTTCTCC CATTCCCATC TGCGCGCCCA CGCGCTGCAG
ATCGCGCTCG CCGAAGGCCG GCTCGGCGAT GCATCGGAGC TGAGCCACGC GATGCTCGCC
GAGCATCAGG ATTCGCCCAT GGCCCATATA TGGCTGGCGA TGGCGCGGAC CGCCCTTTCC
GCCGTCGAAT ATTGCCGCAC CTACCGCCTG CGCGCCGCGG ATCAGGTCAA GATGGCGATG
GTGCTTCTTG GCGAAGGCGA TGCGACGTTC GATCAATATG CGATCGTGCT TCCGATCATC
CTCGATGCCG CGATGCGACG CGACGGGGCG GACATGGCGT TGCAGGAAAT CGCGGTCGCC
ACGAAGCGAT TTGCGGAACG CGGCCTGATA TCGATGACGA TCATGATGGA GGCGCTGGTG
CTCCTCTATC AGCTACGATC GGGGTCGGCG CCGCGGACCA TCGATCCCCG GCAACTGGAT
CTCGCTTTGC GGCCGCCATC GGCATCGCCC TGGCGCGAGC GCGACAGCGT CCGGCACGCG
GTCGCCCTGC ACGCGATATC CGTCGCTTCG CCGGAGACCG CCCTTTCCGT CGCCCAGGCG
ATGCTGCGCG ACGGCCAGGC CGGAGGCCGC GTCGGAACAC GGATCAAGGC GCTGGTCCTC
ACCAGCCTGG CGCATGAGCG GGAGGGCGAC CGGCCTGCCG CGGATCGCAG CATGACCGAG
GCCCTGCGCC TCGCCGTCGA CGAATCCGTG GTGGCGCCAT TTGCCGAGGA GGGGCCCGCC
CTGCACCCCA TTCTCGAACG CATCGCCAGG GAAGAGCCGA CGTCGAAATT GGCCCGTCAT
CTCGAAAAGA TCCTCCAGCT CATAAGCGCG TCAAGCCACC CCAGCCAACT GACCGACCGG
GAAGCGGAAA TACTGGCTCA TCTGGCGGAC GGCGTATCGA ACAAGCTGAT CGCGCGGCGG
CTGGCCCTGA CGGAAAACAC CGTCAAATTT CATCTGAAGA ACATCTTCGC CAAGCTGGGC
GTCGCCAGCA GGAAAGAGGC GGCGGCCTGC GCCTTCCGCG ATCTGTAG
|
|---|
| Protein sequence | MALCRRDLPL RSLNVARSGK LSILYGPAGY GKTTILAQWR QDLIDQGLPV AWITAAREDG
DPQAFLKVLM LALRDAGVDL GEAGLWASGD ISAARRLEGA ILALERSGKP AVIIVDAFET
VNEPSMDAMF ADLIEMLPDH VHLVLASRQR PRLTLSTHLA RGNVRLIGPD ELRFNENEMA
QMLGATVTAS DLAALSERTG GWPIAVQLHQ LWLASAPEGA ELSSRRPMAE LTQYMADEVL
RTLTDAHRDL LTDLSIFPEI ETNLADHVRQ SEDSALLLEE ISDLLPGLIE RHGAGIETSY
RLHPLIADHA GRQLKTGRGR EALLRHRAAL WLWNDRRHGE ALNQAILGHD NGLLRLFTET
LPTLEIFLAH GTDELRAVLR VLPPGSLRQS PRIRLAEALI LSKAGLFKDA WKIAEAVAAE
SAGGDDDPLQ ETERLTIRSI IASHFMTACS VADMALDRIS RIAPTTPLYC AFLDTGRLLT
YQQSGDLEAA RMALARARAA YDSSGDFPFS HSHLRAHALQ IALAEGRLGD ASELSHAMLA
EHQDSPMAHI WLAMARTALS AVEYCRTYRL RAADQVKMAM VLLGEGDATF DQYAIVLPII
LDAAMRRDGA DMALQEIAVA TKRFAERGLI SMTIMMEALV LLYQLRSGSA PRTIDPRQLD
LALRPPSASP WRERDSVRHA VALHAISVAS PETALSVAQA MLRDGQAGGR VGTRIKALVL
TSLAHEREGD RPAADRSMTE ALRLAVDESV VAPFAEEGPA LHPILERIAR EEPTSKLARH
LEKILQLISA SSHPSQLTDR EAEILAHLAD GVSNKLIARR LALTENTVKF HLKNIFAKLG
VASRKEAAAC AFRDL
|
|---|
| |