Gene Swit_4116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_4116 
Symbol 
ID5199221 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp4519295 
End bp4519912 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content59% 
IMG OID640583671 
ProductCRP/FNR family transcriptional regulator 
Protein accessionYP_001264595 
Protein GI148557013 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGCGCAAT CCGCATGGAT CAAGCGCTAT CCCAACGATA CGGAGGTTCA TCCTGCCGGT 
ACCCCCGTTC GCGAGCTATG GATGGTGATG GAGGGGGCGC TGGAGTTGCG CAGGGACGCC
TATACCGGCG CCCGTTCGGT GCTGTCCTTC TCGCAGCCTG GCGAGATTCT GGGCTTCAAC
TCCCAATTCT CGGATGCCGT CCCGACATAT AATGTGATGA CCTACGGCTT CACCAAGCTC
CTGCATATTC CGGGCTCGAC CATGCGGGAC GTGTTGCGCG AACAGCCGGA ACTCGTCTGG
ACGGTGGCCA GCTATTACTT TACGCGGCTC CAGCTGCGAA CCGATTATAT CGCCTTGCAT
GCCACGGCGC CGCTGAAGGA GCGGATCATC CTGCAACTCC TGCAGATGGC GCGCCAGACC
GCCAATATGA CGGATGAGAT CCATCTGCGG CTTTCGCAGG AGAGCCTCGC CTTTCTGCTG
GGCACATCGC GCCAGAGCAT CAATCGCGAG CTCAAGACCC TGAAGGATCT CGGCCTGATC
GACTACAAGG GCGGTAAGAT CCACGTTCCC AGCCTGTCGA CGTTAATGTC GCTGCACGAT
CTATCGATGA AGAATTGA
 
Protein sequence
MAQSAWIKRY PNDTEVHPAG TPVRELWMVM EGALELRRDA YTGARSVLSF SQPGEILGFN 
SQFSDAVPTY NVMTYGFTKL LHIPGSTMRD VLREQPELVW TVASYYFTRL QLRTDYIALH
ATAPLKERII LQLLQMARQT ANMTDEIHLR LSQESLAFLL GTSRQSINRE LKTLKDLGLI
DYKGGKIHVP SLSTLMSLHD LSMKN