| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4086 |
|---|
| Symbol | |
|---|
| ID | 5200309 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4487599 |
|---|
| End bp | 4488900 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640583642 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001264567 |
|---|
| Protein GI | 148556985 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.0463716 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.690757 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATGA CCGAGCGAAC GCAGCATCCA CGGGCCTGGC TGTTCGTCGG CATCTTCACC
TTCTGCTATC TGGTGTCGTC GCTCGACCGT TATGTCGTCA ACCTGACGAT CCAGCCGATC
GCCACCAGCC TGCACCTGGA CGACGTCCAG ATCAGCATGC TGGTGGGACT GGCCTTCACG
CTGTTCTATT CGACGGCGGG GCTGCTGCTC GGGGCGCTCG TCGACCGCTA CGACCGGCGG
GTCATCGTCG TCTGCGGGAT CGTCATCTGG ACGATGGCGA CCGCGTTCAC CGGCCTCGCC
TGGAGCTATG CGTCGCTGCT GCTGGCGCGC ATCCTGGTCG GGACGGGCGA GGCGGCGCTG
TCGCCCTCGG CCTATTCGAT CATCGCCGAG ACCTTTCCGC CGGCGAAGCT CAGCCGGCCG
ACCAGCATCT ATTTCCTCGG CGGGGCGATC GGGCCCGGCA TATCGCTCGT CCTCGGCGGG
CTGATGCTGG GCGTCGCCGA ACATCTCAAC CAGGCCCAGG CGCTCGGCTG GCTCGACAAT
GAGCCGTGGC GCTTCGTGCT GCTGCTCGCG GCGGCTCCGG GCGCGCTGGC GGCGCTGGCG
GTGTTCCTGT TCGTCACCGA TCCGCGCCGG TCGCGGCCCG CGCCCGAGCG CGCCAGGCCC
GCGACCAGCC TGGTCGGGGA ACTGCGCACC AAGCCGGCGC TCTATGCGGC GCTGCTGATC
GGCGTGAGCG CCGTGTCGGT CCAGATCAAC GGGCTCGCCG TGTGGTGGCC GACCCATGCG
CTGCGCAGCT TCGGCTGGCC GCTGACGCAG AGCGGCGTCT GGTTCGGCGG GGCGCTGGCC
GGCGGCGCGC TGATCGGCAT CGCCCTGGGC GGGTCGCTCG GCACGGCGAT GAGCCGCCGG
CTCGGCGAGC GCGGCGTCAG TCTGGCGATG GCGCTGCTGT CGGCGGGCGC GCTGATCCCG
ATGGCGGGCG CGACGCTGAT CCCCGATCCG ATGATGCAGT TCGGCGCGGT CGCGCTGTCG
CTCGCGCTCG CCTTCGCGGT CAACTGCCTG GCGCCGACCG CCTTCCAGCT CGCCGCCAGC
CCCGACGTGC GCGGGCGGAT CGCGGCGCTC TACGTCAGCG TCGGGACCGT GGTCGGCGCC
GGCGTGGGGC CGGTGCTGGT CGCCTTCATC GGCCAGATGC GGATCGGCGG CGCTCCGGCG
GGGCTGGGCG TCGGGCTCGC CAGCGTCGGT TTCGGCAGCG GCCTGTGCAT GATCCTCGCC
TTCGCCTGGG CGAGCCGGAG CGGCGCCTCC CGGACGGTTT AG
|
|---|
| Protein sequence | MPMTERTQHP RAWLFVGIFT FCYLVSSLDR YVVNLTIQPI ATSLHLDDVQ ISMLVGLAFT
LFYSTAGLLL GALVDRYDRR VIVVCGIVIW TMATAFTGLA WSYASLLLAR ILVGTGEAAL
SPSAYSIIAE TFPPAKLSRP TSIYFLGGAI GPGISLVLGG LMLGVAEHLN QAQALGWLDN
EPWRFVLLLA AAPGALAALA VFLFVTDPRR SRPAPERARP ATSLVGELRT KPALYAALLI
GVSAVSVQIN GLAVWWPTHA LRSFGWPLTQ SGVWFGGALA GGALIGIALG GSLGTAMSRR
LGERGVSLAM ALLSAGALIP MAGATLIPDP MMQFGAVALS LALAFAVNCL APTAFQLAAS
PDVRGRIAAL YVSVGTVVGA GVGPVLVAFI GQMRIGGAPA GLGVGLASVG FGSGLCMILA
FAWASRSGAS RTV
|
|---|
| |