| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3884 |
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| Symbol | |
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| ID | 5200322 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 4270400 |
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| End bp | 4272607 |
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| Gene Length | 2208 bp |
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| Protein Length | 735 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640583439 |
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| Product | branched-chain alpha-keto acid dehydrogenase E1 component |
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| Protein accession | YP_001264367 |
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| Protein GI | 148556785 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit
[COG1071] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGCGG CTGAGACGAT CCACGAGAAT TTCCGCGCCG CGCTGCGATC GGGCACCCTG
CCCGCGCGGC GATCCCGGCT GGGGCTCGCC GACGCCGGCA TCGCCGCGCC CGCGCTGGTC
GACCTGTTCC ACTCGCAGGT GGTGAGTCGC CAGCTCGACC GCATCTCGCG CAAGCTGCAG
GCGCGGGGCG AGGGCTTCTA CACGATCGGC AGCTCGGGCC ATGAGGGCAA TGCCGCGCTC
GCCGCCGCGC TGCGGGCCGG CGACATGGCC TTCCTCCACT ATCGCGACGC CGCCTTCCAG
ATCCACCGGT CGAAGCAGAT CCCCGGCCAG ACTCCGGTCT GGGACATGCT GTTGAGCTTC
GCCGCGTCGG CGGACGACCC GATCTCGGGC GGGCGGCACA AGGTGCTCGG ATCGAAGGCG
CTCGCCATCC CGCCGCAGAC CAGCACGATC GCCTCGCACC TGCCCAAGGC GGTGGGCGCG
GCGTTCAGCA TCGGCGTCGC CGCCCGGATC GGGCTGGCGG ACCGGCCGCT CGCCCCCGAC
TCGATCATAT TGTGCAGCTT CGGCGACGCC TCGGCGAACC ATTCGACCGC GCAGGGGGCG
ATCAACACCG CCGGCTGGGC CGCCTATCAG GGCATCCCCA TGCCGATCAT CTTCGCCTGC
GAGGACAATG GCATCGGCAT CTCCACCCGC ACGCCGTCCG GCTGGATCGC CGCCTCGTTC
CGCAACCGCC CCGCGCTCGC CTATCTCGCC TGCGACGGGC TCGACCTGCT CGACGCGCTG
TGCACGGCGC GCGAGGCGGC GGCGATCGCC CGCGAGCGGC GCAAGCCGGT GTTCCTCCAC
ATGGGCTGCA CCCGGCTCTA CGGCCATGCC GGATCGGACG TGCAGTCGAC CTATCTGTCG
CGCACCGAGA TCGCCGAGAG CGACGCGCGC GATCCGCTGC TCCACGGCGC GGCGCTGCTC
GCCGACCTCG GCATCCTGCG GCCCGACCAG ATCCTCGATC TCTACGAGGA GGCCGAGGAG
ACGATCGCGC GCGCGGCCGA GGAGGCGATC CGCCGCCCCA AGCTGACCAC CCCGGCGCAG
GTGATGGCGA GCCTGCTGCC GCCCCGCCGC GCCGTCGCCA CGACCAACCT GCCCTCGCCC
GAGCAGCGCG CCGAGACCTT CGGCGGCGAC GCGGCGCAGA TGGACAAGCC GCAGCACATG
GCGCGGCTGC TGAGCTGGGC GCTGGCCGAC GCGATGCTGC AATGGCCGCA GATCGTCGTC
GCGGGCGAGG ATGTCGGCCC CAGGGGCGGC GTCTACAACG TCACCGCGAA GCTCCACCAG
CGCTTCGGCC CGGCGCGGGT GATCAACACG CTGCTCGACG AGCAGAGCAT CCTCGGCCTC
GGCATCGGCT TCGCCCACAA CGACCTGCTG GCGATCACCG AGATCCAGTT CCTCGCCTAT
GTCCACAATG CCGAGGACCA GTTGCGCGGC GAGGCGGCGA CGCTGCCCTT CTTCTCGGAC
GGCCAATATG CCAACCCGAT GATCGTGCGG ATCGCCGGGC TCGGCTACCA GAAGGGCTTC
GGCGGCCATT TCCACAACGA CAACAGCCTG GCGGTCTTCC GCGACATTCC CGGCATCGTC
CTCGCCTGCC CGTCCAACGG GCGCGACGCG GTGGCGATGC TACGCGAATG CGTGCGGCTG
GCGATCGAGG AACGGCGGGT CGTCGTCTTC GTCGAGCCGA TCGCGCTCTA CATGACCCGC
GACCTCCATG CCGAGGGCGA CGGCCTGTGG ACCAGCGTCT ACGAGGCGCC GGGCAGCGAT
ACCCCGATCC GCATCGGCGA GGTCGGCCGC CATGGGGACG GCATCGACCT CGCCATCGTC
AGCTATGCCA ATGGCTATTA TCTGTCGCGC CAGGCGCAGA AGCTGCTGGC CGACGAACAT
GGCGTCGATG CGCGGGTGAT CGACCTGCGC TGGCTCGCCC CGGTCGATCC CGACGCCGTC
TTGCGCGCGG TCGGCGACGC CCGCCGCGTG CTGATCGTCG ACGAATGCCG GATCACCGGA
TCGCAGAGCG AGGCGCTGAT GGCGATGTTC ATGGAGAAGG CGCCCGGCCT GCCGGTCAGC
CGGATCGCCG CCGAGGACAG CTTCATCCCG CTCGCCCGCG CCGCGACGCT GACCCTGCCG
AGCCGCGATT CGATCCTCGC CGCCGCGCTG GAGGCTGTCC GTGACTAA
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| Protein sequence | MDAAETIHEN FRAALRSGTL PARRSRLGLA DAGIAAPALV DLFHSQVVSR QLDRISRKLQ
ARGEGFYTIG SSGHEGNAAL AAALRAGDMA FLHYRDAAFQ IHRSKQIPGQ TPVWDMLLSF
AASADDPISG GRHKVLGSKA LAIPPQTSTI ASHLPKAVGA AFSIGVAARI GLADRPLAPD
SIILCSFGDA SANHSTAQGA INTAGWAAYQ GIPMPIIFAC EDNGIGISTR TPSGWIAASF
RNRPALAYLA CDGLDLLDAL CTAREAAAIA RERRKPVFLH MGCTRLYGHA GSDVQSTYLS
RTEIAESDAR DPLLHGAALL ADLGILRPDQ ILDLYEEAEE TIARAAEEAI RRPKLTTPAQ
VMASLLPPRR AVATTNLPSP EQRAETFGGD AAQMDKPQHM ARLLSWALAD AMLQWPQIVV
AGEDVGPRGG VYNVTAKLHQ RFGPARVINT LLDEQSILGL GIGFAHNDLL AITEIQFLAY
VHNAEDQLRG EAATLPFFSD GQYANPMIVR IAGLGYQKGF GGHFHNDNSL AVFRDIPGIV
LACPSNGRDA VAMLRECVRL AIEERRVVVF VEPIALYMTR DLHAEGDGLW TSVYEAPGSD
TPIRIGEVGR HGDGIDLAIV SYANGYYLSR QAQKLLADEH GVDARVIDLR WLAPVDPDAV
LRAVGDARRV LIVDECRITG SQSEALMAMF MEKAPGLPVS RIAAEDSFIP LARAATLTLP
SRDSILAAAL EAVRD
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