| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3787 |
|---|
| Symbol | |
|---|
| ID | 5200267 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 4156284 |
|---|
| End bp | 4157210 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640583342 |
|---|
| Product | thymidylate synthase |
|---|
| Protein accession | YP_001264270 |
|---|
| Protein GI | 148556688 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0207] Thymidylate synthase |
|---|
| TIGRFAM ID | [TIGR03284] thymidylate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.134727 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAC ATCCCGAACA GCAATATCTC GATGCCATGG CGCGCGCCTG GTATGGCGGC
GACGAGCGGG TCGACCGGAC CGGGGTGGGG ACCAAGTCGC TGTTCGGGGT GACGATGCGG
TTCGACCTGT CGGACGGCAC GGTGCCGCTG ATCACCACCA AGAAGATCTT CTGGAAGTCG
GCTATCAAGG AGCTGATCTG GTTCCTGTCG GGCGACACCA ACATCCGTCC GCTGGTGATG
CAGAACGTCC ATATCTGGAC CGACTGGCCG CTCGACAAAT ATCGCAAGGC GACCGGCGAG
GCGATCGACC GCGACGCGTT CGAGCGGCGG ATCGTCGACG ACCCTGCCTT CGCCGCCGAG
TGGGGCGACC TCGGCCCGGT CTACGGCAAG CAATGGGTCG ACTGGCCGCG CTACACCCCG
GCCGGCGACG GGCTGTTCCG GCGCGAGGAG AAAGGCGTCA ACCAGATCGC CGAGCTGGTC
GGGATGCTGC GCGCCAACCC CAGCTCGCGG CGGCTGATCT TCACCGGCTG GAACGTGCCC
GAGCTGCCGG GGATGGCGCT GCCGCCGTGC CACATGACCT ATCAATATCA TGTCGCGGGC
GGGCGGCTGT CGGGCATCCT CTACCAGCGC TCGTGCGACC TCGGCCTCGG CTTCCCGTTC
AACATCTTCG AGGCGGCGGT GCTAATCCGC ATGCTCGCGC AGCAGGCCGA CCTGGAGCCG
GGCGAGCTTG TGTGGATGGG CGCCGACACC CATGTCTATT CGAACCACGG CCATCTGGTC
GAGGAGCAGC TCTCCCGCTC CCCACGCCCC TTCCCCCGGC TCAGCCTGGC CCGCAAGCCG
GCGGACATGT TCTCCTATGC GCTCGACGAC TTCGTGATCG AGGGCTACGA CCCGCACCCG
CACATCAAGG CCGAGGTGGC GGTGTGA
|
|---|
| Protein sequence | MTEHPEQQYL DAMARAWYGG DERVDRTGVG TKSLFGVTMR FDLSDGTVPL ITTKKIFWKS
AIKELIWFLS GDTNIRPLVM QNVHIWTDWP LDKYRKATGE AIDRDAFERR IVDDPAFAAE
WGDLGPVYGK QWVDWPRYTP AGDGLFRREE KGVNQIAELV GMLRANPSSR RLIFTGWNVP
ELPGMALPPC HMTYQYHVAG GRLSGILYQR SCDLGLGFPF NIFEAAVLIR MLAQQADLEP
GELVWMGADT HVYSNHGHLV EEQLSRSPRP FPRLSLARKP ADMFSYALDD FVIEGYDPHP
HIKAEVAV
|
|---|
| |