Gene Swit_3720 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwit_3720 
Symbol 
ID5200330 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingomonas wittichii RW1 
KingdomBacteria 
Replicon accessionNC_009511 
Strand
Start bp4083256 
End bp4084521 
Gene Length1266 bp 
Protein Length421 aa 
Translation table11 
GC content69% 
IMG OID640583275 
ProductTolC family type I secretion outer membrane protein 
Protein accessionYP_001264203 
Protein GI148556621 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.667765 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCGCA AGAGGGCGCT CCCCCGCCCC CTCTTGGCCT GCCTGCTCGC GAGCGTCGCC 
ATGCCGGCCC AGGCGACGAC GCTGGAAGAG GCGATCGCGG CCGCCATGAA CCATGCGCCC
GAAATAGAAG CGGCCCGTGC TGACGCGGAT GCCGCCGATG CCCGGATCAA GGAAGCCAGA
GGCCAGGGCC TTCCCAGCGC GACGCTGAGC GGGACGATCG GCTATGGCCG CCTCGATCCG
CAGGGCTATT TCGGGCTTCC GGCTGCGAAC GTCACCCCCC GCGCTGCGCA GCTCACCATC
GAGCAACCTT TGTTCATGGG CGGCAGGGTC AGCGCCGGGA TCGCGCAGGC GAAAGCCGGG
AGCGAGGCCG CGCACGCGGG CGAAAGCATG ACGCGAAGCC AAATCGTCGT CGCGACGGTC
CAGGCCTATG GGGACGTGCT GACCACGCAC CGCATGGTCG TGCTCTACGA ACAGATGGTC
GGCCAGATGG AGGAGATCCA GCGCCAGGCT CGACTTCGCT TCAAGGCCGG GGAAAGCCCC
AGCACCGATG TCGCCCAGGC CGCGGCCCGT CTTGCCGAAG CCCAGGCCGC GCTTGAAGCT
GCGCGCGGCG TTGCCGTCTC GGCCGATGCG CGGTTCACCA ATCTGACCGG CCTGGCGCCG
CAGGATTTGC AGCCCCTTCC GGCAAACCCG GCCATGCCGG GATCGCTCGA TGAAGCGCTC
GACATTGCGC GGGCGAACAA CCCTGCTCTC GCCCAGGCCG AAGCCGCATT GGAGGCCGCG
CGCGCTGGCG CGAGAGGCGC GCGAGCGGAA CGCTTGCCCA CGGTCGGGGC ATTCGCGGAA
GGCTCCACGA TCCGCGACCA GTTCTTCCCC GACTATCGTG CCGACGGCGC CACGGTCGGC
GTGCGGGCGC GCTGGCAATT ATTCTCCGGT GGGCGCGTCT CGGCGAAGAT CACCGAAACC
GACAGCGCGG TTAGAGCTGC CGATGCGCGC GAGCGTGCGG CGCGGTCCGC CGTCGATGAA
CAGACGATCA GCGCCTTTCA GGGCGTTCGA TCCGCCGTGC TGGTCGAAAC CGCCGCTGGT
CAACAAGCCC TTGCCGCTGC GCAGGCACGG GACAGCGTTC GCCATGAGGT CCGCGTCGGC
ATGAAGCCGC AGCTCGATCT GCTTGATGCC GAACGCGAAG CCATCGCGGC CGCCGTGAGC
GAGGCCCGGG CGCAAGGCGA TCGCATCGTT GCAGCCTACC GGCTGCTCGC CCTCCTCGGG
CGCTGA
 
Protein sequence
MIRKRALPRP LLACLLASVA MPAQATTLEE AIAAAMNHAP EIEAARADAD AADARIKEAR 
GQGLPSATLS GTIGYGRLDP QGYFGLPAAN VTPRAAQLTI EQPLFMGGRV SAGIAQAKAG
SEAAHAGESM TRSQIVVATV QAYGDVLTTH RMVVLYEQMV GQMEEIQRQA RLRFKAGESP
STDVAQAAAR LAEAQAALEA ARGVAVSADA RFTNLTGLAP QDLQPLPANP AMPGSLDEAL
DIARANNPAL AQAEAALEAA RAGARGARAE RLPTVGAFAE GSTIRDQFFP DYRADGATVG
VRARWQLFSG GRVSAKITET DSAVRAADAR ERAARSAVDE QTISAFQGVR SAVLVETAAG
QQALAAAQAR DSVRHEVRVG MKPQLDLLDA EREAIAAAVS EARAQGDRIV AAYRLLALLG
R