| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3720 |
|---|
| Symbol | |
|---|
| ID | 5200330 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 4083256 |
|---|
| End bp | 4084521 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640583275 |
|---|
| Product | TolC family type I secretion outer membrane protein |
|---|
| Protein accession | YP_001264203 |
|---|
| Protein GI | 148556621 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.667765 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCA AGAGGGCGCT CCCCCGCCCC CTCTTGGCCT GCCTGCTCGC GAGCGTCGCC
ATGCCGGCCC AGGCGACGAC GCTGGAAGAG GCGATCGCGG CCGCCATGAA CCATGCGCCC
GAAATAGAAG CGGCCCGTGC TGACGCGGAT GCCGCCGATG CCCGGATCAA GGAAGCCAGA
GGCCAGGGCC TTCCCAGCGC GACGCTGAGC GGGACGATCG GCTATGGCCG CCTCGATCCG
CAGGGCTATT TCGGGCTTCC GGCTGCGAAC GTCACCCCCC GCGCTGCGCA GCTCACCATC
GAGCAACCTT TGTTCATGGG CGGCAGGGTC AGCGCCGGGA TCGCGCAGGC GAAAGCCGGG
AGCGAGGCCG CGCACGCGGG CGAAAGCATG ACGCGAAGCC AAATCGTCGT CGCGACGGTC
CAGGCCTATG GGGACGTGCT GACCACGCAC CGCATGGTCG TGCTCTACGA ACAGATGGTC
GGCCAGATGG AGGAGATCCA GCGCCAGGCT CGACTTCGCT TCAAGGCCGG GGAAAGCCCC
AGCACCGATG TCGCCCAGGC CGCGGCCCGT CTTGCCGAAG CCCAGGCCGC GCTTGAAGCT
GCGCGCGGCG TTGCCGTCTC GGCCGATGCG CGGTTCACCA ATCTGACCGG CCTGGCGCCG
CAGGATTTGC AGCCCCTTCC GGCAAACCCG GCCATGCCGG GATCGCTCGA TGAAGCGCTC
GACATTGCGC GGGCGAACAA CCCTGCTCTC GCCCAGGCCG AAGCCGCATT GGAGGCCGCG
CGCGCTGGCG CGAGAGGCGC GCGAGCGGAA CGCTTGCCCA CGGTCGGGGC ATTCGCGGAA
GGCTCCACGA TCCGCGACCA GTTCTTCCCC GACTATCGTG CCGACGGCGC CACGGTCGGC
GTGCGGGCGC GCTGGCAATT ATTCTCCGGT GGGCGCGTCT CGGCGAAGAT CACCGAAACC
GACAGCGCGG TTAGAGCTGC CGATGCGCGC GAGCGTGCGG CGCGGTCCGC CGTCGATGAA
CAGACGATCA GCGCCTTTCA GGGCGTTCGA TCCGCCGTGC TGGTCGAAAC CGCCGCTGGT
CAACAAGCCC TTGCCGCTGC GCAGGCACGG GACAGCGTTC GCCATGAGGT CCGCGTCGGC
ATGAAGCCGC AGCTCGATCT GCTTGATGCC GAACGCGAAG CCATCGCGGC CGCCGTGAGC
GAGGCCCGGG CGCAAGGCGA TCGCATCGTT GCAGCCTACC GGCTGCTCGC CCTCCTCGGG
CGCTGA
|
|---|
| Protein sequence | MIRKRALPRP LLACLLASVA MPAQATTLEE AIAAAMNHAP EIEAARADAD AADARIKEAR
GQGLPSATLS GTIGYGRLDP QGYFGLPAAN VTPRAAQLTI EQPLFMGGRV SAGIAQAKAG
SEAAHAGESM TRSQIVVATV QAYGDVLTTH RMVVLYEQMV GQMEEIQRQA RLRFKAGESP
STDVAQAAAR LAEAQAALEA ARGVAVSADA RFTNLTGLAP QDLQPLPANP AMPGSLDEAL
DIARANNPAL AQAEAALEAA RAGARGARAE RLPTVGAFAE GSTIRDQFFP DYRADGATVG
VRARWQLFSG GRVSAKITET DSAVRAADAR ERAARSAVDE QTISAFQGVR SAVLVETAAG
QQALAAAQAR DSVRHEVRVG MKPQLDLLDA EREAIAAAVS EARAQGDRIV AAYRLLALLG
R
|
|---|
| |