| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3540 |
|---|
| Symbol | |
|---|
| ID | 5196177 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3897154 |
|---|
| End bp | 3899751 |
|---|
| Gene Length | 2598 bp |
|---|
| Protein Length | 865 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640583095 |
|---|
| Product | helicase domain-containing protein |
|---|
| Protein accession | YP_001264024 |
|---|
| Protein GI | 148556442 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4581] Superfamily II RNA helicase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.420075 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.672772 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGCT TCAGCGCCCA GCCGGTGGTC GCCGTGCTGG GCCCGACCAA CACCGGCAAG
ACGCATCTCG CGATCGAGCG GATGTGCGGT CATTCGAGCG GGATGATCGG CTTCCCGCTG
CGCCTGCTGG CGCGCGAGGT CTACGACCGG GTGGTCGCGA TCAAGGGCAA GGAACGGGTC
GCGCTGATCA CCGGCGAGGA GAAGCTGATC CCGCCCAACG CGCAATATTT CCTGACCACG
GCGGAATCGA TGCCGATAAG CCCCGGCCTG TTGGCCGGTG GCGACAAACA AGGTGATAGA
GACTATGCCT TCGTCGCGCT CGACGAGGCG CAGCTCGGCG CCGATCCCGA GCGCGGCCAT
GTCTTCACCG ACCGGCTGCT GCGCGCGCGG GGCCGCGAGG AGACGATGAT CCTGGGGTCG
GAGGCGCTGC GCCCGATGAT CCGCGCGCTG GTGCCCGATG CCGAGATCAT CGGCCGGCCG
CGCTTCTCGA CCCTGACCTA TGCCGGCGCC ACCAAGCTGT CGCGCCTGCC GCCGCGATCG
GCCATCGTCG CCTTCTCGGC CGAGGAGGTC TATGCGGTGG CGGAGATGCT GCGCCGGCTG
CGCGGCGGCG CGGCGGTGGT GATGGGGGCG CTCAGCCCGC GCACCCGCAA CGCCCAGGTC
GGGATGTTCC AGGCGGGCGA GGTCGACTAT CTGGTCGCCA CCGACGCGAT CGGCATGGGC
CTGAACATGG ACGTGGCGCA CGTCGCCTTC GCCTCGCTCC GCAAGTTCGA CGGGCGCCGG
GCGCGGCGCC TGACCATTGC CGAAATGGCG CAGATCGCCG GGCGCGCCGG GCGGCACCAG
CGCGACGGCA CCTTCGGCAC GCTCGCGCTC GAAGGCGGCA GCGGCGCGCG CTTCGAGGAC
GAGGAGGTCG ACGCGATCGA AGCGCACCAC TTCCCGCCGA TCGACCATCT CTACTGGCGC
GAGGGCGCGC CGTCGCTCGC CTCGCTCGAC GCGCTGATCG CCGATCTGGA GCGGCGGCCC
GACCGGCCGG TGCTGCGCGC CGCGCCGCAG GCGATCGACC TGTCGGTGCT CAAGCGCCTC
GCCGAGGAGG ACTGGGTGCG CGAGCGGGCG CGCGGCAGGC CGATGATCGC CCGGCTCTGG
GCCGCCTGCG GCCTGCCCGA TTTCCGCAAG ACCGGCCCCG AGCCGCACAG CCGCCTCGTC
TCGCGCATCT TCCGCCACCT GAGCGAGGGC GACGGCCATC TGCCGAAGAG CTGGTTCGCC
GAGGAGCTGG CCCGGCTCGA CAGCGTCCAG GGCGATGTCG AGACGCTGGC CGATCGCATC
GCCGGAGTGC GGACCTGGGC CTATATCGCC CATCGCGCCG ACTGGCTCGC CGACGCCGAC
CACTGGGCCG AGCGCACCCG CACGCTCGAG GAGAAGCTGT CCGACGCGCT CCACCAGCGG
CTGACCCAGC GCTTCGTCGA CCGGCGAACC TCGGTGCTGA TGCGCGACCT GGGCGCGAAG
GGCGGCGACC TGGCGCTGCC GGTCAAGGTC GACGAGGAGG GCATCGTCAC CGTCGACGGC
GAGGCGATCG GCCGGCTGAT CGGCTTCCGC TTCAAGCCCG ACCATCTCGC CCGCCATGGC
GACATGAAGC GGCTGATGGC GGCGGCCGAG CGGCGGCTGG GCACCGAGCT GGCGTCGCGC
GCCCGGCAAC TCGCCGCCGA CGAGGACGGC CATTTCTCGC TGGCGACCGA CGCGGGCCGG
CCGGTCGCGA TCTTCTGGCG CGGCGACGTG GTGGCGCGGC TGGAGAAGGG CCGCACCCTG
CTCACCCCGC GCATCCGCCT CCATCGCGCG CTCGACTCGC TGAGCCCGGC CGACCGCACC
GGCGTCGAGC AGCGGCTGGC GACCTGGCTC GAAGGGCGCA TCCAGCGCGA GCTGAAGCCG
CTCGCCCGCT ATTTCGAGGC GGCGCGCGAC CCGGCCTGCC CGCCGTCGCT GCGCGCGCTG
CTGGCGCCGC TGGCCGAGGC CGGCGGGATC ATCGCGCGCG CCGGCATCGC CTCGGCGATC
GAGCATCTCG ACCGGGAGGA CCGCTCGCGC GCCGAGCGGC TCGACGTCAA GCTCGGCACG
ATCGACGTCT ATTCGCCGAC CCTGCTCAAG CCCGAGCCGA CCCGCTGGCG GATCGCCCTG
TTCGCGGCGG CCGAGGGACA GATGATGCCC GAGCTGCCCG TGCCGGGCGC GGTGTCGATG
ACGACCCCGG CCGACGCCGC CGCCTGCGAG GCGATGGTCC GCGCCGGCTA TCGCGCGCTC
GGCGCCCAGA TGCTGCGCGT CGACCTGGCC GAGCGGCTCG CCCGGATCGC CCATGATTCG
CGCAGCGGCC GCGCGCCCTT CACCCCCGAT CCCGGCCTCG CCACCTCGCT CGGCCTGCGC
CATGCCAGCT TCGCGCAGCT CATGCTGGCG CTCGGCTTCC GCGCCGCGTC GCCCGCCAGG
GGAGAGATCG CGGCCGAGGC CTGGGTGTGG AAGGGCAAGC GCGAGCCGCG CCAGGAGCGC
GCGGCCCGGC CCGGCAACGC CTTCGGCGCG CTCGCCGATC TCTATCCGGG AACGCCGTCG
CGCAATGCGG CTCGATAA
|
|---|
| Protein sequence | MASFSAQPVV AVLGPTNTGK THLAIERMCG HSSGMIGFPL RLLAREVYDR VVAIKGKERV
ALITGEEKLI PPNAQYFLTT AESMPISPGL LAGGDKQGDR DYAFVALDEA QLGADPERGH
VFTDRLLRAR GREETMILGS EALRPMIRAL VPDAEIIGRP RFSTLTYAGA TKLSRLPPRS
AIVAFSAEEV YAVAEMLRRL RGGAAVVMGA LSPRTRNAQV GMFQAGEVDY LVATDAIGMG
LNMDVAHVAF ASLRKFDGRR ARRLTIAEMA QIAGRAGRHQ RDGTFGTLAL EGGSGARFED
EEVDAIEAHH FPPIDHLYWR EGAPSLASLD ALIADLERRP DRPVLRAAPQ AIDLSVLKRL
AEEDWVRERA RGRPMIARLW AACGLPDFRK TGPEPHSRLV SRIFRHLSEG DGHLPKSWFA
EELARLDSVQ GDVETLADRI AGVRTWAYIA HRADWLADAD HWAERTRTLE EKLSDALHQR
LTQRFVDRRT SVLMRDLGAK GGDLALPVKV DEEGIVTVDG EAIGRLIGFR FKPDHLARHG
DMKRLMAAAE RRLGTELASR ARQLAADEDG HFSLATDAGR PVAIFWRGDV VARLEKGRTL
LTPRIRLHRA LDSLSPADRT GVEQRLATWL EGRIQRELKP LARYFEAARD PACPPSLRAL
LAPLAEAGGI IARAGIASAI EHLDREDRSR AERLDVKLGT IDVYSPTLLK PEPTRWRIAL
FAAAEGQMMP ELPVPGAVSM TTPADAAACE AMVRAGYRAL GAQMLRVDLA ERLARIAHDS
RSGRAPFTPD PGLATSLGLR HASFAQLMLA LGFRAASPAR GEIAAEAWVW KGKREPRQER
AARPGNAFGA LADLYPGTPS RNAAR
|
|---|
| |