| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3420 |
|---|
| Symbol | |
|---|
| ID | 5197746 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3752834 |
|---|
| End bp | 3754903 |
|---|
| Gene Length | 2070 bp |
|---|
| Protein Length | 689 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640582967 |
|---|
| Product | resolvase domain-containing protein |
|---|
| Protein accession | YP_001263904 |
|---|
| Protein GI | 148556322 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1961] Site-specific recombinases, DNA invertase Pin homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.408833 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.207789 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGGCA ATGATCTCCT TCCAGTCACG GTGCTCAAGC GCAAAGCTGT GGTGTATGTC
CGACAGTCGA CCCCGGGTCA GGTCCAGAAC AACCTGGAGA GCCAGCGCCG ACAATATGAG
CTTGTCGATG TTGCCCGACG CTGGGGATTT CACGATGTCG AGGTGATCGA CGATGACCTT
GGTCGGACCG CCAGCGGCAC TGTCGACCGC CCCGGTTTCG AACGACTGGT CAGCGGCCTG
TGCACGGGCA AGGTTGGCGC GGTGCTTTGC TTGGACGCAT CGCGCCTTTC CCGTAATGGC
CGGGACTGGC ACCACCTTTT GGAGCTGTGT GGCCTGGTTG AAGCGCGCGT GATCGATCTC
GACGGGGTAT ACGATCCCTG TCGACCAAAC GATCGATTGT TGTTGGGCAT GAAGGGCAGC
ATCAGCGAGT TTGAGCTTGG CATTTTGCGA ACACGCATGC TTGACGCGGC GCGCGCCAAG
GCAAGGCGGG GAGAACTGCG CCTCAGTGTT CCGATCGGCT ATATCTGGCA CCGCGAATAC
GGCCTGGGGC TGGATCCCGA TATCCGGGTA CAGGAGGCGA TCCGCCTCAT CTTTTCGCGT
TTCCGCGAGC TTGGCAGCGC CCGCCAGGTG CTGATTTCGC TGACAGCTGA CAATTTCCAT
TTTCCCCGCC CTTCTGACGG CCGCAAAACG GTGTCCTTCG ACTGGGTGCC GGTTCGCTAT
CGAAGCGTTA TTTCGATCCT GAAGAACCCC TTCTACGCTG GGGTCTATGT CTATGGTAAA
AGCGAGAAGC GAACCGAGAT TGTCGATGGC AGGGCACGCA AAAGTTACGG CCACAGCAAG
CCCTTTGGAA CGTGGGAAGT GCTGCTCCAG GATCATCACG AAGGCTATAT CGATTGGAGT
GAGTTTGAAA GGAACCAGAG CCATATCGCC GTCAACGCCT TCGGACAGAA GGGCGGCATC
AAGTCTGGTC GTGGTGGCCG CGCGTTGCTC GCGGGCCTGC TCACCTGCGG CCGATGTGGA
AGACGGTTGG GCGTTGTCTA TTCGGGCCGG CCTCCGGGTC ATCCCTATTA CCGCTGCGAA
CGTATCAACC AGATGCTGGC CAAGCCACGA TGCATGACTT TTGGCGCATC TCGCATCGAC
CCTGCCATAG GCAAAGAGAT ATTGAGAGCC GTGACGCCGA TGGCGATCGA GGCCGCAATG
GAAGCTGATC GGGCGCATCG GGATAATCTG GAAGAACGGC ACCGCATGGT GGAGCTGGAC
TTGCAGCAAG CCCGATACGA GGCATCTCTC GCTGAACGTC GCTATGCTGC CTGCGACCCT
GATAACCGCC TGATCGCTGC CCAACTCGAG AATAGCTGGG AAGCAGCGCT CAGGCGTGTG
GAAGCCTGTG AAGCGGGTTT GGCCCAAGCG CGACAAATCG ATCTGGCCGC GCCGGTGCCA
GATTTTGCTG GCATTGCCAC CGACCTGGAG ACCGCTTGGC GCTCGCCTAA CGTCGACATG
CGTTGTCGTC AGCAGCTCCT CCGCACGCTC GTGACCGATA TCATCGCTGA TGTCGATGAA
GAGCAACGTG AAGTCATTTT GACGATCCAC TGGAAAGGTG GCCAACATTC TCAGCTGCGC
ATTCGCAAAC CCAAAGCAGG CGAACATGGC CAGAGTACGC CCGAAGCCGC CCTTGCCATC
ATCCGCTCCA TGGCCACCCG GTGGTCCGAT GCAGACATTG CCGCCACTCT CAACCGGATG
GGAATGCAAA CCGGACAAGG CAAGACCTGG ACAGCGCGCC GTGTCGGCTC GCTGCGCACT
GTCCACAAAA TCCACGGCTA CCGATCCGCC GAAAAGAATG GAGAGTGGCT CACGCTGACC
GAAGCCGCCA AAAAGCTTGG GGTTACTGCC CATCGGGTCC GTCGACTGAT CAAGGAGGGC
GTGCTCCCTA CCGAGCAAGT TGTACCCGAT GCGCCGCACC AAATCCGAGC CACGGACCTG
GAAAAGGACG AAGTGACCCA GTTCCCGCGT CACAGAGGCC CGTGTCGCAT CAAAATGGAA
AACCAAAAGT CCCTGTTTCC GGACATTTGA
|
|---|
| Protein sequence | MTGNDLLPVT VLKRKAVVYV RQSTPGQVQN NLESQRRQYE LVDVARRWGF HDVEVIDDDL
GRTASGTVDR PGFERLVSGL CTGKVGAVLC LDASRLSRNG RDWHHLLELC GLVEARVIDL
DGVYDPCRPN DRLLLGMKGS ISEFELGILR TRMLDAARAK ARRGELRLSV PIGYIWHREY
GLGLDPDIRV QEAIRLIFSR FRELGSARQV LISLTADNFH FPRPSDGRKT VSFDWVPVRY
RSVISILKNP FYAGVYVYGK SEKRTEIVDG RARKSYGHSK PFGTWEVLLQ DHHEGYIDWS
EFERNQSHIA VNAFGQKGGI KSGRGGRALL AGLLTCGRCG RRLGVVYSGR PPGHPYYRCE
RINQMLAKPR CMTFGASRID PAIGKEILRA VTPMAIEAAM EADRAHRDNL EERHRMVELD
LQQARYEASL AERRYAACDP DNRLIAAQLE NSWEAALRRV EACEAGLAQA RQIDLAAPVP
DFAGIATDLE TAWRSPNVDM RCRQQLLRTL VTDIIADVDE EQREVILTIH WKGGQHSQLR
IRKPKAGEHG QSTPEAALAI IRSMATRWSD ADIAATLNRM GMQTGQGKTW TARRVGSLRT
VHKIHGYRSA EKNGEWLTLT EAAKKLGVTA HRVRRLIKEG VLPTEQVVPD APHQIRATDL
EKDEVTQFPR HRGPCRIKME NQKSLFPDI
|
|---|
| |