| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3287 |
|---|
| Symbol | |
|---|
| ID | 5198786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3617521 |
|---|
| End bp | 3618261 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640582832 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001263771 |
|---|
| Protein GI | 148556189 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.197949 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGCTGG GCGCCACGGG CGGACTCGGC GCCGCGTCGG CGCGCGCGCT CGCCCGCGAC
GGCAGCGATC TCGCGCTCTG CTTCCGCAGC AAGCGCGACG CCGCCGAGGC GCTGGCCGAG
GAACTGCGCG GCCATGGCCG GACGGTGACG CTCCATCCGG TCGACGCCAC CGATCCCGCG
ACGATCGACG CCGCGCGCGA CGCCGCGATC GCCGCGCATG GCCGGGTCCA TGCGCTGGTC
TGGGCGGCGG GCCCGCTGGT CGACCAGCTC CACCTGTCCG AGACGCCGCT GGAGAAGTGG
AAGCGCGCGA TCGCGGTGGA GGTGAACGGC TTCTTCGCCG CGGCCCAGTC GCTGATCCCG
CATTTCCGCG CCGAGGGCGG CGGCGCCTTC GTCCATCTCG GATCGGCGGG CGACCTCTAC
TGGCCGCCGC GCGACGGCCT GTCGGTGGCG CCCAAGGCCG CCAACGAGTC GCTGGTGCGC
GGCATCGCCA AGGAGGAGGG CCGCCACGGC ATCCGCGCCA ACAGCGTGCT GGTCGGCGTG
ATCGACGCGG GCATGTTCCA CGAGCTGCTG GCGCAGGGCC AGTTCGACGA CGCATGGGTC
AAGGAGGTGC AGGCGCAGCT GCCGCTCAAG CGCTGGGGCA CGGCGGAGGA GATCGGCCAC
GCCGTCTCGT TCCTCGCCTC GAAGCGCGCG GGCTACACCA CGGGGCAGCA GCTCGCGGTG
GCCGGCGGCT ACGGCGTCTG A
|
|---|
| Protein sequence | MVLGATGGLG AASARALARD GSDLALCFRS KRDAAEALAE ELRGHGRTVT LHPVDATDPA
TIDAARDAAI AAHGRVHALV WAAGPLVDQL HLSETPLEKW KRAIAVEVNG FFAAAQSLIP
HFRAEGGGAF VHLGSAGDLY WPPRDGLSVA PKAANESLVR GIAKEEGRHG IRANSVLVGV
IDAGMFHELL AQGQFDDAWV KEVQAQLPLK RWGTAEEIGH AVSFLASKRA GYTTGQQLAV
AGGYGV
|
|---|
| |