| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2926 |
|---|
| Symbol | |
|---|
| ID | 5199933 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3212981 |
|---|
| End bp | 3214576 |
|---|
| Gene Length | 1596 bp |
|---|
| Protein Length | 531 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640582476 |
|---|
| Product | isocitrate lyase |
|---|
| Protein accession | YP_001263416 |
|---|
| Protein GI | 148555834 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2224] Isocitrate lyase |
|---|
| TIGRFAM ID | [TIGR01346] isocitrate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.70995 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.314009 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTACC AGGACAACAT CGCGCAGGCC GAACAGCTGA TCCGCGGCCA GGGTTCGCCC
TGGGCCGGCA TCGGCGCCGA GGCGGTCGCC CGCATGCGGC TGCAGAACCG TTTCCAGACC
GGCCTCGACA TCGCCCGCTA CACGGCGAAG ATCATGCGCG AGGACATGGC CGCCTATGAC
CTCGACCCTG CCAACTACAC CCAGTCGCTG GGCTGCTGGC ACGGCTTCAT CGGCCAGCAG
AAGCTGATCT CGATCAAGAA GCATTTCGGC ACCACCAAGC GCCGCTACCT CTATCTGTCG
GGCTGGATGG TCGCCGCGCT GCGCTCCGAC TTCGGGCCGC TGCCCGACCA GTCGATGCAC
GAGAAGACCA GCGTGCCCGC GCTGATCGAG GAGCTCTACA CCTTCCTGCG CCAGGCCGAC
GCGCGCGAGC TGGGCGGGTT GTTCCGCGAT CTCGACAAGG CCCGCGAGAG TGGCAACCAG
GTCGAGGAGC AGCGCCTGGT CCACGCGATC GACAACCACC AGACCCATGT CGTGCCGATC
ATCGCCGACA TCGACGCGGG CTTCGGCAAC GCCGAGGCGA CCTATCTGCT CGCCAAGAAG
ATGATCCAGG CCGGCGCCTG CGCGCTGCAG ATCGAGAACC AGGTGTCCGA CGAGAAGCAG
TGCGGCCACC AGGACGGCAA GGTGACGGTG CCGCACGAGG ACTTCCTCGC GAAGATCCGC
GCCTGCCGCT ACGCCTTCCT CGAACTCGGC ATCAACGACG GCATCATCGT CGCCCGCACC
GACTCGCTCG GCGCCGGCCT GACCAAGCAG ATCGCCTTCT CGGCCCAGCC GGGCGACATC
GGCGACCAGT ATAACAGCTT TCTCGACTGC GAGGAGATCA CCGACACCAG CACGATCAAC
GGCGACGTGG TGATCAACCG CGACGGCAAG CTGATGCGCC CGAAGCGGCT GCGCTCGAAC
CTGTTCCAGT TCCGGCCCGG CACCGGCGCG GACCGCTGCG TGCTCGATTG CATCACCTCG
CTCCAGAACG GCGCCGACCT GCTGTGGATC GAGACCGAGA AGCCGCATAT CGAGCAGATC
GCCAGCATGG TCGACCGCAT CCGCGAGGCG GTCCCGAACG CCAAGCTGGT CTACAACAAC
TCGCCGTCGT TCAACTGGAC GCTCAACTTC CGCCAGCAGG TGTTCGACGC CTGGGCCGAG
GCGGGCAAGG ACGTGTCGGC CTATGACCGC GCCAGGCTGA TGAGCGTCGA CTATGACGGG
TCGGAACTGG CGGCCGAGGC CGACGAGAAG ATCCGCACCT TCCAGCGCGA CGCGGCGAAG
CGGGCGGGCA TCTTCCACCA CCTGATCACC CTGCCGACCT ATCACACCGC GGCGCTGTCG
ACCGACAACC TCGCCAAGGA GTATTTCGGC GAGGCGGGGA TGCTCGGCTA CGTGCTCAAC
GTGCAGCGCC AGGAGATCCG CCAGGGCATC GCCTGTGTCC GGCACCAGAA CATGGCCGGC
TCCGACATCG GCGACGACCA CAAGGACTAT TTCGCCGGCG AGGCCGCGCT GAAGGCCGGC
GGCGCGCACA ACACGATGAA CCAGTTCGCG GCGTAA
|
|---|
| Protein sequence | MTYQDNIAQA EQLIRGQGSP WAGIGAEAVA RMRLQNRFQT GLDIARYTAK IMREDMAAYD
LDPANYTQSL GCWHGFIGQQ KLISIKKHFG TTKRRYLYLS GWMVAALRSD FGPLPDQSMH
EKTSVPALIE ELYTFLRQAD ARELGGLFRD LDKARESGNQ VEEQRLVHAI DNHQTHVVPI
IADIDAGFGN AEATYLLAKK MIQAGACALQ IENQVSDEKQ CGHQDGKVTV PHEDFLAKIR
ACRYAFLELG INDGIIVART DSLGAGLTKQ IAFSAQPGDI GDQYNSFLDC EEITDTSTIN
GDVVINRDGK LMRPKRLRSN LFQFRPGTGA DRCVLDCITS LQNGADLLWI ETEKPHIEQI
ASMVDRIREA VPNAKLVYNN SPSFNWTLNF RQQVFDAWAE AGKDVSAYDR ARLMSVDYDG
SELAAEADEK IRTFQRDAAK RAGIFHHLIT LPTYHTAALS TDNLAKEYFG EAGMLGYVLN
VQRQEIRQGI ACVRHQNMAG SDIGDDHKDY FAGEAALKAG GAHNTMNQFA A
|
|---|
| |