| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2874 |
|---|
| Symbol | |
|---|
| ID | 5200118 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3153013 |
|---|
| End bp | 3154821 |
|---|
| Gene Length | 1809 bp |
|---|
| Protein Length | 602 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640582424 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001263364 |
|---|
| Protein GI | 148555782 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0266128 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGACC GGAACGACGC GCAGTTCGAA GATCGGCTGA TGGACTGGAT CGAGCGCCGC
TGGCGCACCG TCTTCTGGCT GATGTTCCTG GGGGCCTGCG CCTATCTCCT CTATTATCGC
TGGGGCCAGG TCCGCTGGCT GGCGCTGAGC GACACCGACG ACAATCTCCG GCTCGCCGAG
GTCAAGGCCT GGCTCGGCGG GCAGGCCTGG TTCGACCTGC GCCAGTACAA GCTCGCCCCG
CCGGGCGGCC TCAACGTCCA CTGGTCGCGG ATCGTCGACC TGCCGATCGC GGCGATGATC
CTGGCGTTCC GCCCGCTGGT CGGCGAGTTC ACCGCCGAGC GGATCGCCTG CGCGGTGGCG
CCGCTGCTGG CGCTGGCGCC GGCGCTGTGG GCGATCGTGC TGACGGTGCG GCGGACCATC
CACCCGCGCG CCTATCCGAT CGCCTTCGCG GTGCTGATGT GCGCGCAGAC GACGCTGTTC
ATGTGGATGC CGCTGCGCAT CGACCATCAT GGCTGGCAGC TCGCGATGCT GGCGCTGGTC
GTCGCCGGGA TCGCCGACCG CCACCCGCAG CGCGGCGGCG CCGTCGCGGG CCTCGCCACG
GCGGTGTCGC TCGGCATCGG CCTCGAACTG ATCCCGATGA TGGCGGTGGC GGGCGCGTCG
ATCGCGCTGC GCTGGGCCTG GGACCGCGAA CAGGCAGGCC GGCTGCGCGC CTATGCGGTG
GCGCTGGGCG GCGGCTGCGC GCTCGCCTTC GCCGGCTTCG CCTCCTACGA CAACCGGCGG
ATGATGTGCG ACGTGCTGTC GCCGGTCTAT CTGTCGACGC TGCTGCTGAC CTCGGCGCTG
ATGCTGGGAC TGTCGCTCGC CGCCATCCGG GGGCCGTGGC GGCGGCTCGC CGCGCTGGCC
GCCGCGGGCG CGGCCATCGC CGTCTTCTTC GCGCTCAGCT TCCCGCAATG CCTCGGCGCG
CCCGAGAGCA TCTCGCCCGA GCTCAAGCTG CTGTGGTTCG ACAATATCCG CGAGGTGAAG
CCGCTCACCA CCAAGCCGTG GCGCGACGCG CTGCAGACCG CCTGGCTGCC GCTGATCGGC
ACGGCGGGAG CGATCGCCGC CTTCTGGCAG GCGCGGCGCA CCGAGCAGGC CCCGGTCTGG
GCGACGATCG CGCTGCTCAG CCTGCTGGCG ACGGCGGGGC TCGCCTGGCA ATCGCGCTTC
GGCCCGCAGG CGCAGCTGCT GGGCGTCTAT GGCGCCGCCG CGCTCGGCTG GCGGCTGCTG
CCCCGGCTGC TCGATTCGGC ATCGTCGCTG GTCCGGGTCG GCGGCACGCT GGTGGTCTTC
TTCGCGCTGT CGGGGCAGGT CGCCCAGTTC GTGGCGATGA TCCCCAAGCC CGCCAAGGAG
GTCCGCAAGG AAAAGGCGCG CGCCGAAGCC GATCGCCAGC CGCGCCGCTG CACCACCCTG
CCCGCGCTCG CCCAGCTCGA CCGGCTGCCG GCGGCGACGA TGCTGACCTT CATCGACCTG
GGGCCGCGGC TGATCGCGAT GACCCGGCAC AGCGCGGTCG CCGGCCCCTA TCACCGCAAC
GGCGACGCGA TCCTCGACGT CCAGCACAGC TTCCGCGCGA CATCGCCCGA GGTGGCGCAT
GCAGTGATGA AGCGCCGCGG CGCGACGATG CTGCTGCTCT GCCCGGGCAT GGCCGAATCG
ACCATCTACA AGGCGCGGGC GCCGCACGGC TTCTACACCC AGCTGATGGA CGGGAAGATT
CCCGGCTGGC TGGAGCCGGT CGAGCTGCCC GGCAATTCGC CCTTCCGCCT GTGGCGGCGG
ATCGACTGA
|
|---|
| Protein sequence | MQDRNDAQFE DRLMDWIERR WRTVFWLMFL GACAYLLYYR WGQVRWLALS DTDDNLRLAE
VKAWLGGQAW FDLRQYKLAP PGGLNVHWSR IVDLPIAAMI LAFRPLVGEF TAERIACAVA
PLLALAPALW AIVLTVRRTI HPRAYPIAFA VLMCAQTTLF MWMPLRIDHH GWQLAMLALV
VAGIADRHPQ RGGAVAGLAT AVSLGIGLEL IPMMAVAGAS IALRWAWDRE QAGRLRAYAV
ALGGGCALAF AGFASYDNRR MMCDVLSPVY LSTLLLTSAL MLGLSLAAIR GPWRRLAALA
AAGAAIAVFF ALSFPQCLGA PESISPELKL LWFDNIREVK PLTTKPWRDA LQTAWLPLIG
TAGAIAAFWQ ARRTEQAPVW ATIALLSLLA TAGLAWQSRF GPQAQLLGVY GAAALGWRLL
PRLLDSASSL VRVGGTLVVF FALSGQVAQF VAMIPKPAKE VRKEKARAEA DRQPRRCTTL
PALAQLDRLP AATMLTFIDL GPRLIAMTRH SAVAGPYHRN GDAILDVQHS FRATSPEVAH
AVMKRRGATM LLLCPGMAES TIYKARAPHG FYTQLMDGKI PGWLEPVELP GNSPFRLWRR
ID
|
|---|
| |