| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1957 |
|---|
| Symbol | |
|---|
| ID | 5200232 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 2193405 |
|---|
| End bp | 2194328 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640581502 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001262455 |
|---|
| Protein GI | 148554873 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.707337 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGACC GCACCGACGT CGCCCGCCGC CTGCTTCCGC CGATGGCGGC GCTGCATGCC
TTCGCGGCGG CGGCCCGCCA CGGCCATTTC TCGCGCGCGG GAGCGGAGGT CGGGCTGACC
CAGAGCGCGG TGAGCCGGCA GGTCGCACTG CTTGAGGACT GGCTGGGGGT GCGGCTGTTC
GAACGGACCG GCCGCCGCGT CGCGCTGACC GCCGACGGCG CCGCCTATCG GGACGCGATC
GAACCCGCGC TGCAGCGCAT CCGCCAGGCG ACCGCGCAGA TGATCGACCG GACCGAGCGC
GGCGCGATCA CGATCGCAAC ATTGCCGAGC TTCGGCATGC GCTGGCTGGC GCCGCGTTTG
CCGGGGCTGA CGGCGCGGCA GGCCGACCTG GTCGTCAACT TCGCCGCGCG GTCCGACCGG
TTCGACATTG CCGCCTCGGG CTATGACGCG GCGATCCATT TCGGCCTGCC CGACTGGCCC
GGCGCGACCC ACGACCTGCT GTTCCGCGAG CGCGCCCTCC CCGTCGCGGC ACCGGCGCTG
CGCGACCGGA TCGCCGGCGG CGACCCCGCC GCGCTGCTCG GCCTGCCGCT GCTCCACCTG
ACGACCCGTC CCCATGCCTG GCAGCGCTGG TTCGCGGCGA CCGGGGTCGA CGCCCCGCCG
CTCACCCCCG AACCGAGCTT CGAGCATTTC CTGATGCTGG CGCAGGCCGC CGCGGCGGGC
AGCGGCGCCG CGCTGGTCCC GACCTTCCTG ATCGAGCCCG AGCTGGCATC GGGCGCGCTG
GTGCGGCTGT CCGACCGGCC GGTGTCGGGC CGCGAGGCCT ATTATCTGGT CTACCCGCCC
GAACGCCTCG CCAACCGCCG CTTCCGTTCC TTCCGCGACT GGCTGCTCGC CGAGGCGGAG
GGGGAACGAC GGGAGGGGGA CTGA
|
|---|
| Protein sequence | MTDRTDVARR LLPPMAALHA FAAAARHGHF SRAGAEVGLT QSAVSRQVAL LEDWLGVRLF
ERTGRRVALT ADGAAYRDAI EPALQRIRQA TAQMIDRTER GAITIATLPS FGMRWLAPRL
PGLTARQADL VVNFAARSDR FDIAASGYDA AIHFGLPDWP GATHDLLFRE RALPVAAPAL
RDRIAGGDPA ALLGLPLLHL TTRPHAWQRW FAATGVDAPP LTPEPSFEHF LMLAQAAAAG
SGAALVPTFL IEPELASGAL VRLSDRPVSG REAYYLVYPP ERLANRRFRS FRDWLLAEAE
GERREGD
|
|---|
| |